Related papers: Complete characterization of the minimal-ABC trees
Deciding whether there is a single tree -a supertree- that summarizes the evolutionary information in a collection of unrooted trees is a fundamental problem in phylogenetics. We consider two versions of this question: agreement and…
We introduce the problem of finding a spanning tree along with a partition of the tree edges into fewest number of feasible sets, where constraints on the edges define feasibility. The motivation comes from wireless networking, where we…
We systematically explore a class of constrained optimization problems with linear objective function and constraints that are linear combinations of logarithms of the optimization variables. Such problems can be viewed as a generalization…
Vertex deletion and edge deletion problems play a central role in Parameterized Complexity. Examples include classical problems like Feedback Vertex Set, Odd Cycle Transversal, and Chordal Deletion. Interestingly, the study of edge…
We start with a review of the pervasiveness of the nearest neighbor search problem and techniques used to solve it along with some experimental results. In the second chapter, we show reductions between two different classes of geo- metric…
We introduce a graph partitioning problem motivated by computational topology and propose two algorithms that produce approximate solutions. Specifically, given a weighted, undirected graph $G$ and a positive integer $k$, we desire to find…
The rank (also known as protection number or leaf-height) of a vertex in a rooted tree is the minimum distance between the vertex and any of its leaf descendants. We consider the sum of ranks over all vertices (known as the security) in…
Trees are partial orderings where every element has a linearly ordered set of smaller elements. We define and study several natural notions of completeness of trees, extending Dedekind completeness of linear orders and Dedekind-MacNeille…
Quasi-trees generalize trees in that the unique "path" between two nodes may be infinite and have any countable order type. They are used to define the rank-width of a countable graph in such a way that it is equal to the least upper-bound…
Robertson and Seymour's celebrated Graph Minor Theorem states that graphs are well-quasi-ordered by the minor relation. Unlike the minor relation, the topological minor relation does not well-quasi-order graphs in general. Among all known…
In this work, I collect and discuss a series of open questions in one-dimensional geometric optimization in Euclidean spaces. The focus is on two classes of problems: maximal distance minimizers and Steiner trees. Maximal distance…
We find precise asymptotic estimates for the number of planar maps and graphs with a condition on the minimum degree, and properties of random graphs from these classes. In particular we show that the size of the largest tree attached to…
We present a novel algorithm for the minimum-depth elimination tree problem, which is equivalent to the optimal treedepth decomposition problem. Our algorithm makes use of two cheaply-computed lower bound functions to prune the search tree,…
Given a rooted tree and a ranking of its leaves, what is the minimum number of inversions of the leaves that can be attained by ordering the tree? This variation of the problem of counting inversions in arrays originated in mathematical…
In a recent paper, Kwon and Oum claim that every graph of bounded rank-width is a pivot-minor of a graph of bounded tree-width (while the converse has been known true already before). We study the analogous questions for "depth" parameters…
The Rooted Maximum Leaf Outbranching problem consists in finding a spanning directed tree rooted at some prescribed vertex of a digraph with the maximum number of leaves. Its parameterized version asks if there exists such a tree with at…
We consider the well-studied problem of finding a spanning tree with minimum average distance between vertex pairs (called a MAD tree). This is a classic network design problem which is known to be NP-hard. While approximation algorithms…
Recent improvements in adder optimization could be achieved by optimizing the AND-trees occurring within the constructed circuits. The overlap of such trees and its potential for pure size optimization has not been taken into account…
The Steiner tree problem can be stated in terms of finding a connected set of minimal length containing a given set of finitely many points. We show how to formulate it as a mass-minimization problem for $1$-dimensional currents with…
In this paper we characterize the unique graph whose algebraic connectivity is minimum among all connected graphs with given order and fixed matching number or edge covering number, and present two lower bounds for the algebraic…