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Hybrid molecular dynamics/Monte Carlo simulations used to study melts of unentangled, thermoreversibly associating supramolecular polymers. In this first of a series of papers, we describe and validate a model that is effective in…

Soft Condensed Matter · Physics 2015-05-13 Robert S. Hoy , Glenn H. Fredrickson

The fields of mechanobiology and biomechanics are expanding our understanding of the complex behavior of soft biological tissues across multiple scales. Given the intricate connection between tissue microstructure and its macroscale…

Soft Condensed Matter · Physics 2025-09-03 Sara Cardona , Mathias Peirlinck , Behrooz Fereidoonnezhad

We model the mechanics of associating trivalent dendrimer network glasses with a focus on their energy dissipation properties. Various combinations of sticky bond (SB) strength and kinetics are employed. The toughness (work-to-fracture) of…

Soft Condensed Matter · Physics 2015-06-16 Arvind Srikanth , Robert S. Hoy , Berend C. Rinderspacher , Jan W. Andzelm

Internally generated active stresses drive soft materials into architectures inaccessible to thermal self-assembly. We use a microtubule-based active fluid to assemble and irreversibly restructure actin-fascin networks. Subsequently, we…

Soft Condensed Matter · Physics 2026-05-13 Kyu Hwan Choi , Sattvic Ray , Reef Sweeney , Zvonimir Dogic , Sho C. Takatori

The development of chemical reaction models aids understanding and prediction in areas ranging from biology to electrochemistry and combustion. A systematic approach to building reaction network models uses observational data not only to…

Computational Engineering, Finance, and Science · Computer Science 2019-01-23 Nikhil Galagali , Youssef M. Marzouk

We report the mechanical response of a model nanocomposite system of poly(styrene) (PS)-silica to large-amplitude oscillatory shear deformations. Nonlinear behavior of PS nanocomposites is discussed with the changes in particle dispersion…

Soft Condensed Matter · Physics 2013-01-14 Erkan Senses , Pinar Akcora

The design of photo-active collagen systems is presented as a basis for establishing biomimetic materials with varied network architecture and programmable macroscopic properties. Following in-house isolation of type I collagen, reaction…

Chemical Physics · Physics 2013-06-24 Giuseppe Tronci , Stephen J. Russell , David J. Wood

We carry out a direct comparison of experimental and numerical realizations of the exact same granular system as it undergoes shear jamming. We adjust the numerical methods used to optimally represent the experimental settings and outcomes…

This study explores novel activation functions that enhance the ability of neural networks to manipulate data topology during training. Building on the limitations of traditional activation functions like $\mathrm{ReLU}$, we propose…

Machine Learning · Computer Science 2025-07-18 Pavel Snopov , Oleg R. Musin

Molecular topology of polymers plays a key role in determining their physical properties. We studied herein the topological effects on the static and dynamic properties of a 2D catenated network of DNA rings called a kinetoplast.…

Soft Condensed Matter · Physics 2022-09-13 Indresh Yadav , Dana Al Sulaiman , Patrick S. Doyle

Control of physical behaviors of nematic colloids and colloidal crystals has been demonstrated by tuning particle shape, topology, chirality and surface charging. However, the capability of altering physical behaviors of such soft matter…

Soft Condensed Matter · Physics 2021-01-12 Ye Yuan , Patrick Keller , Ivan I. Smalyukh

We investigate theoretically the effect of polymer tension on the collective behavior of reversibly binding cross-links. For this purpose, we employ a model of two weakly bending wormlike chains aligned in parallel by a tensile force, with…

Biological Physics · Physics 2015-02-10 Panayotis Benetatos , Alice von der Heydt , Annette Zippelius

Nanomagnets are the building blocks of many existing and emergent spintronic technologies. Magnetization dynamics of nanomagnets is often dominated by nonlinear processes, which have been recently shown to have many surprising features and…

Mesoscale and Nanoscale Physics · Physics 2024-05-28 Arezoo Etesamirad , Julia Kharlan , Rodolfo Rodriguez , Igor Barsukov , Roman Verba

Analytical and numerical calculations are presented for the mechanical response of fiber networks in a state of axisymmetric prestress, in the limit where geometric non-linearities such as fiber rotation are negligible. This allows us to…

Biological Physics · Physics 2014-02-27 D. A. Head , D. Mizuno

We study the structural and dynamical mechanisms of reinforcement of a polymer nanocomposite (PNC) via coarse-grained molecular dynamics simulations. In a regime of strong polymer-filler interactions, the stress at failure of the PNC is…

Soft Condensed Matter · Physics 2012-04-27 Kutvonen Aki , Rossi Giulia , Ala-Nissila Tapio

Active matter encompasses different nonequilibrium systems in which individual constituents convert energy into non-conservative forces or motion at the microscale. This review provides an elementary introduction to the role of topology in…

Soft Condensed Matter · Physics 2022-06-28 Suraj Shankar , Anton Souslov , Mark J. Bowick , M. Cristina Marchetti , Vincenzo Vitelli

In this work, we develop a twist-dependent electrochemical activity map, combining a tight-binding electronic structure model with modified Marcus-Hush-Chidsey kinetics in trilayer graphene. We identify a counterintuitive rate enhancement…

Mesoscale and Nanoscale Physics · Physics 2024-06-19 Mohammad Babar , Ziyan Zhu , Rachel Kurchin , Efthimios Kaxiras , Venkatasubramanian Viswanathan

Nematic polymeric networks are (heat and light) activable materials, which combine the features of rubber and nematic liquid crystals. When only the stretching energy of a thin sheet of nematic polymeric network is minimized, the intrinsic…

Soft Condensed Matter · Physics 2020-08-05 O. Ozenda , A. M. Sonnet , E. G. Virga

Materials with network-like microstructure, including polymers, are the backbone for many natural and human-made materials such as gels, biological tissues, metamaterials, and rubbers. Fracture processes in these networked materials are…

Soft Condensed Matter · Physics 2020-01-29 Ahmed Ghareeb , Ahmed Elbanna

We study the effect of turnover of cross linkers, motors and filaments on the generation of a contractile stress in a network of filaments connected by passive crosslinkers and subjected to the forces exerted by molecular motors. We perform…

Biological Physics · Physics 2016-05-10 Tetsuya Hiraiwa , Guillaume Salbreux
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