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Background Nucleotide sequences contain multiple codes responsible for organism's functioning and structure. They can be investigated by various signal processing methods. These techniques are well suited for indication of frequently…

Quantitative Methods · Quantitative Biology 2007-05-23 Simon Kogan

Hundreds of Evolutionary Computation approaches have been reported. From an evolutionary perspective they focus on two fundamental mechanisms: cultural inheritance in Swarm Intelligence and genetic inheritance in Evolutionary Algorithms.…

Neural and Evolutionary Computing · Computer Science 2022-11-28 Sizhe Yuen , Thomas H. G. Ezard , Adam J. Sobey

More and more, optimization methods are used to find diverse solution sets. We compare solution diversity in multi-objective optimization, multimodal optimization, and quality diversity in a simple domain. We show that multiobjective…

Neural and Evolutionary Computing · Computer Science 2021-05-11 Alexander Hagg , Mike Preuss , Alexander Asteroth , Thomas Bäck

In this paper, a genetic algorithm, one of the evolutionary algorithms optimization methods, is used for the first time for the problem of finding extremal binary self-dual codes. We present a comparison of the computational times between a…

Neural and Evolutionary Computing · Computer Science 2020-12-23 Adrian Korban , Serap Sahinkaya , Deniz Ustun

In order to survive, reproduce and (in multicellular organisms) differentiate, cells must control the concentrations of the myriad different proteins that are encoded in the genome. The precision of this control is limited by the inevitable…

Molecular Networks · Quantitative Biology 2013-08-01 Gasper Tkacik , Aleksandra M. Walczak , William Bialek

Genome sequencing is essential to decode genetic information, identify organisms, understand diseases and advance personalized medicine. A critical step in any genome sequencing technique is genome assembly. However, de novo genome…

How to automatically design better machine learning programs is an open problem within AutoML. While evolution has been a popular tool to search for better ML programs, using learning itself to guide the search has been less successful and…

Machine Learning · Computer Science 2024-02-09 John D. Co-Reyes , Yingjie Miao , George Tucker , Aleksandra Faust , Esteban Real

Multiple string matching is known as locating all the occurrences of a given number of patterns in an arbitrary string. It is used in bio-computing applications where the algorithms are commonly used for retrieval of information such as…

Distributed, Parallel, and Cluster Computing · Computer Science 2014-03-07 S. Arudchutha , T. Nishanthy , R. G. Ragel

Conjugated organic molecules represent an important area of materials chemistry for both fundamental scientific exploration and technological applications. Using a genetic algorithm to computationally screen up to ~25-50 million molecules…

Applied Physics · Physics 2017-07-14 Ilana Y. Kanal , Geoffrey R. Hutchison

Just as physicists strive to develop a TOE (theory of everything), which explains and unifies the physical laws of the universe, the life-scientist wishes to uncover the TOE as it relates to cellular systems. This can only be achieved with…

Quantitative Methods · Quantitative Biology 2009-11-04 Kyung Dae Ko , Yoojin Hong , Gaurav Bhardwaj , Teresa M. Killick , Damian B. van Rossum , Randen L. Patterson

Analyzing the computational complexity of evolutionary algorithms for binary search spaces has significantly increased their theoretical understanding. With this paper, we start the computational complexity analysis of genetic programming.…

Neural and Evolutionary Computing · Computer Science 2010-11-16 Greg Durrett , Frank Neumann , Una-May O'Reilly

A major consideration in multilingual language modeling is how to best represent languages with diverse vocabularies and scripts. Although contemporary text encoding methods cover most of the world's writing systems, they exhibit bias…

Computation and Language · Computer Science 2024-11-12 Tomasz Limisiewicz , Terra Blevins , Hila Gonen , Orevaoghene Ahia , Luke Zettlemoyer

Compact Genetic Algorithms (cGAs) are condensed variants of classical Genetic Algorithms (GAs) that use a probability vector representation of the population instead of the complete population. cGAs have been shown to significantly reduce…

Neural and Evolutionary Computing · Computer Science 2025-04-07 Prasanta Dutta , Anirban Mukhopadhyay

In this research, we investigate the possibility of applying a search strategy to genetic algorithms to explore the entire genetic tree structure. Several methods aid in performing tree searches; however, simpler algorithms such as…

Neural and Evolutionary Computing · Computer Science 2023-08-10 Akshay Hebbar

Evolutionary multitasking has recently emerged as a novel paradigm that enables the similarities and/or latent complementarities (if present) between distinct optimization tasks to be exploited in an autonomous manner simply by solving them…

Neural and Evolutionary Computing · Computer Science 2016-07-20 Abhishek Gupta , Yew-Soon Ong

A new model for evolving Evolutionary Algorithms (EAs) is proposed in this paper. The model is based on the Multi Expression Programming (MEP) technique. Each MEP chromosome encodes an evolutionary pattern that is repeatedly used for…

Neural and Evolutionary Computing · Computer Science 2021-10-13 Mihai Oltean

This thesis investigates the use of problem-specific knowledge to enhance a genetic algorithm approach to multiple-choice optimisation problems. It shows that such information can significantly enhance performance, but that the choice of…

Neural and Evolutionary Computing · Computer Science 2013-05-31 Uwe Aickelin

In Search Based Software Engineering, Genetic Programming has been used for bug fixing, performance improvement and parallelisation of programs through the modification of source code. Where an evolutionary computation algorithm, such as…

Neural and Evolutionary Computing · Computer Science 2012-11-22 Brendan Cody-Kenny , Stephen Barrett

Multi-modal multi-objective optimization is to locate (almost) equivalent Pareto optimal solutions as many as possible. While decomposition-based evolutionary algorithms have good performance for multi-objective optimization, they are…

Neural and Evolutionary Computing · Computer Science 2020-10-01 Ryoji Tanabe , Hisao Ishibuchi

In genetic programming, an evolutionary method for producing computer programs that solve specified computational problems, parent selection is ordinarily based on aggregate measures of performance across an entire training set. Lexicase…

Neural and Evolutionary Computing · Computer Science 2021-06-14 Thomas Helmuth , Lee Spector
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