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Rare diseases pose significant challenges in diagnosis and treatment due to their low prevalence and heterogeneous clinical presentations. Unstructured clinical notes contain valuable information for identifying rare diseases, but manual…

Computation and Language · Computer Science 2024-11-12 Jinge Wu , Hang Dong , Zexi Li , Haowei Wang , Runci Li , Arijit Patra , Chengliang Dai , Waqar Ali , Phil Scordis , Honghan Wu

The unstructured nature of clinical notes within electronic health records often conceals vital patient-related information, making it challenging to access or interpret. To uncover this hidden information, specialized Natural Language…

Introduction: Clinical text classification using natural language processing (NLP) models requires adequate training data to achieve optimal performance. For that, 200-500 documents are typically annotated. The number is constrained by time…

Computation and Language · Computer Science 2026-01-23 Jaya Chaturvedi , Saniya Deshpande , Chenkai Ma , Robert Cobb , Angus Roberts , Robert Stewart , Daniel Stahl , Diana Shamsutdinova

The exponential increase in scientific literature and online information necessitates efficient methods for extracting knowledge from textual data. Natural language processing (NLP) plays a crucial role in addressing this challenge,…

Computation and Language · Computer Science 2025-10-22 Zhyar Rzgar K. Rostam , Gábor Kertész

Large scale contextual representation models have significantly advanced NLP in recent years, understanding the semantics of text to a degree never seen before. However, they need to process large amounts of data to achieve high-quality…

Computation and Language · Computer Science 2021-05-04 Daniel Garcia Bernal , Lodovico Giaretta , Sarunas Girdzijauskas , Magnus Sahlgren

The meaningful use of electronic health records (EHR) continues to progress in the digital era with clinical decision support systems augmented by artificial intelligence. A priority in improving provider experience is to overcome…

Computation and Language · Computer Science 2023-01-30 Yanjun Gao , Dmitriy Dligach , Timothy Miller , John Caskey , Brihat Sharma , Matthew M Churpek , Majid Afshar

The rapid development of COVID-19 vaccines has showcased the global communitys ability to combat infectious diseases. However, the need for post-licensure surveillance systems has grown due to the limited window for safety data collection…

Artificial Intelligence · Computer Science 2025-07-25 Sedigh Khademi , Christopher Palmer , Muhammad Javed , Hazel Clothier , Jim Buttery , Gerardo Luis Dimaguila , Jim Black

Adverse drug reactions / events (ADR/ADE) have a major impact on patient health and health care costs. Detecting ADR's as early as possible and sharing them with regulators, pharma companies, and healthcare providers can prevent morbidity…

Computation and Language · Computer Science 2022-01-07 Hasham Ul Haq , Veysel Kocaman , David Talby

COVID-19's rapid global spread has driven innovative tools for Big Data Analytics. These have guided organizations in all fields of the health industry to track and minimized the effects of virus. Researchers are required to detect…

Databases · Computer Science 2020-05-27 Eman A. Khashan , Ali I. Eldesouky , M. Fadel , Sally M. Elghamrawy

Clinical natural language processing requires methods that can address domain-specific challenges, such as complex medical terminology and clinical contexts. Recently, large language models (LLMs) have shown promise in this domain. Yet,…

Computation and Language · Computer Science 2025-01-28 Ran Xu , Hejie Cui , Yue Yu , Xuan Kan , Wenqi Shi , Yuchen Zhuang , Wei Jin , Joyce Ho , Carl Yang

This report synthesizes the outcomes of a recent interdisciplinary workshop that brought together leading experts in cognitive psychology, language learning, and artificial intelligence (AI)-based natural language processing (NLP). The…

Computation and Language · Computer Science 2025-07-02 Emily Dux Speltz

Generative Large Language Models (LLMs) hold significant promise in healthcare, demonstrating capabilities such as passing medical licensing exams and providing clinical knowledge. However, their current use as information retrieval tools…

Text classifiers are at the core of many NLP applications and use a variety of algorithmic approaches and software. This paper introduces infrastructure and methodologies for text classifiers based on large-scale regular expressions. In…

Computation and Language · Computer Science 2021-06-22 Igor L. Markov , Jacqueline Liu , Adam Vagner

Natural Language Processing (NLP) is revolutionising the way both professionals and laypersons operate in the legal field. The considerable potential for NLP in the legal sector, especially in developing computational assistance tools for…

Computation and Language · Computer Science 2025-12-12 Farid Ariai , Joel Mackenzie , Gianluca Demartini

Natural language processing (NLP) methods for analyzing legal text offer legal scholars and practitioners a range of tools allowing to empirically analyze law on a large scale. However, researchers seem to struggle when it comes to…

Computation and Language · Computer Science 2021-05-26 Dimitrios Tsarapatsanis , Nikolaos Aletras

Natural Language Processing (NLP) has witnessed a transformative leap with the advent of transformer-based architectures, which have significantly enhanced the ability of machines to understand and generate human-like text. This paper…

Computation and Language · Computer Science 2025-03-27 Tianhao Wu , Yu Wang , Ngoc Quach

This technical report introduces a Named Clinical Entity Recognition Benchmark for evaluating language models in healthcare, addressing the crucial natural language processing (NLP) task of extracting structured information from clinical…

Research in Natural Language Processing is making rapid advances, resulting in the publication of a large number of research papers. Finding relevant research papers and their contribution to the domain is a challenging problem. In this…

Computation and Language · Computer Science 2021-04-06 Shashank Shailabh , Sajal Chaurasia , Ashutosh Modi

Natural language processing techniques are being applied to increasingly diverse types of electronic health records, and can benefit from in-depth understanding of the distinguishing characteristics of medical document types. We present a…

Computation and Language · Computer Science 2019-10-02 Denis Newman-Griffis , Eric Fosler-Lussier

Clinical NLP has an immense potential in contributing to how clinical practice will be revolutionized by the advent of large scale processing of clinical records. However, this potential has remained largely untapped due to slow progress…

Computation and Language · Computer Science 2017-03-30 Simon Šuster , Stéphan Tulkens , Walter Daelemans