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Natural language processing (NLP) of clinical trial documents can be useful in new trial design. Here we identify entity types relevant to clinical trial design and propose a framework called CT-BERT for information extraction from clinical…

Quantitative Methods · Quantitative Biology 2021-10-20 Xiong Liu , Greg L. Hersch , Iya Khalil , Murthy Devarakonda

Developing explainability methods for Natural Language Processing (NLP) models is a challenging task, for two main reasons. First, the high dimensionality of the data (large number of tokens) results in low coverage and in turn small…

Computation and Language · Computer Science 2023-03-08 Peyman Jalali , Nengfeng Zhou , Yufei Yu

The rapidly evolving literature of COVID-19 related articles makes it challenging for NLP models to be effectively trained for information retrieval and extraction with the corresponding labeled data that follows the current distribution of…

Information Retrieval · Computer Science 2021-06-16 Nima Ebadi , Peyman Najafirad

Driven by the visions of Data Science, recent years have seen a paradigm shift in Natural Language Processing (NLP). NLP has set the milestone in text processing and proved to be the preferred choice for researchers in the healthcare…

Computers and Society · Computer Science 2020-07-20 Ganga Prasad Basyal , Bhaskar P. Rimal , David Zeng

A long-running goal of the clinical NLP community is the extraction of important variables trapped in clinical notes. However, roadblocks have included dataset shift from the general domain and a lack of public clinical corpora and…

Computation and Language · Computer Science 2022-12-01 Monica Agrawal , Stefan Hegselmann , Hunter Lang , Yoon Kim , David Sontag

Recent developments in large language models (LLMs) have been accompanied by rapidly growing public interest in natural language processing (NLP). This attention is reflected by major news venues, which sometimes invite NLP researchers to…

Computers and Society · Computer Science 2025-07-17 Shomir Wilson

Natural Language Processing (NLP) is an important branch of artificial intelligence that studies how to enable computers to understand, process, and generate human language. Text classification is a fundamental task in NLP, which aims to…

Computation and Language · Computer Science 2024-03-18 Xiaonan Xu , Zheng Xu , Zhipeng Ling , Zhengyu Jin , ShuQian Du

Objective: This study aims to consider small graphs of concepts and exploit them for expressing graph searches over existing COVID-19-related literature, leveraging the increasing use of graphs to represent and query scientific knowledge…

Information Retrieval · Computer Science 2024-06-25 Francesco Invernici , Anna Bernasconi , Stefano Ceri

Natural Language Processing (NLP) for low-resource languages remains fundamentally constrained by the lack of textual corpora, standardized orthographies, and scalable annotation pipelines. While recent advances in large language models…

Computation and Language · Computer Science 2026-02-10 Bonaventure F. P. Dossou , Henri Aïdasso

Participant recruitment based on unstructured medical texts such as clinical notes and radiology reports has been a challenging yet important task for the cohort establishment in clinical research. Recently, Large Language Models (LLMs)…

Computation and Language · Computer Science 2023-07-24 Zihan Guan , Zihao Wu , Zhengliang Liu , Dufan Wu , Hui Ren , Quanzheng Li , Xiang Li , Ninghao Liu

The Electronic Health Record (EHR) is an essential part of the modern medical system and impacts healthcare delivery, operations, and research. Unstructured text is attracting much attention despite structured information in the EHRs and…

Computation and Language · Computer Science 2023-06-29 Irene Li , Keen You , Yujie Qiao , Lucas Huang , Chia-Chun Hsieh , Benjamin Rosand , Jeremy Goldwasser , Dragomir Radev

Electronic health records (EHRs), digital collections of patient healthcare events and observations, are ubiquitous in medicine and critical to healthcare delivery, operations, and research. Despite this central role, EHRs are notoriously…

Although Natural Language Processing (NLP) research on argument mining has advanced considerably in recent years, most studies draw on corpora of asynchronous and written texts, often produced by individuals. Few published corpora of…

Computation and Language · Computer Science 2020-05-26 Christopher Olshefski , Luca Lugini , Ravneet Singh , Diane Litman , Amanda Godley

The Imaging Data Commons (IDC) is a cloud-based database that provides researchers with open access to cancer imaging data, with the goal of facilitating collaboration. However, cohort discovery within the IDC database has a significant…

Machine Learning · Computer Science 2023-11-28 Pranav Kulkarni , Adway Kanhere , Paul H. Yi , Vishwa S. Parekh

Recent advances in natural language processing (NLP) have produced general models that can perform complex tasks such as summarizing long passages and translating across languages. Here, we introduce a method to extract adjective…

Computation and Language · Computer Science 2022-03-07 Andrew Cutler , David M. Condon

Objective: We investigate whether deep learning techniques for natural language processing (NLP) can be used efficiently for patient phenotyping. Patient phenotyping is a classification task for determining whether a patient has a medical…

Quantum Natural Language Processing (QNLP) deals with the design and implementation of NLP models intended to be run on quantum hardware. In this paper, we present results on the first NLP experiments conducted on Noisy Intermediate-Scale…

Computation and Language · Computer Science 2023-05-05 Robin Lorenz , Anna Pearson , Konstantinos Meichanetzidis , Dimitri Kartsaklis , Bob Coecke

[Abridged Abstract] Recent technological advances underscore labor market dynamics, yielding significant consequences for employment prospects and increasing job vacancy data across platforms and languages. Aggregating such data holds…

Computation and Language · Computer Science 2024-05-01 Mike Zhang

The past few years has seen the application of machine learning utilised in the exploration of new materials. As in many fields of research - the vast majority of knowledge is published as text, which poses challenges in either a…

Computation and Language · Computer Science 2022-08-12 Shujing Zhao , Nick Birbilis

Natural Language Processing (NLP), a cornerstone field within artificial intelligence, has been increasingly utilized in the field of materials science literature. Our study conducts a reproducibility analysis of two pioneering works within…

Chemical Physics · Physics 2023-08-01 Xiangyun Lei , Edward Kim , Viktoriia Baibakova , Shijing Sun