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We consider species tree estimation under a standard stochastic model of gene tree evolution that incorporates incomplete lineage sorting (as modeled by a coalescent process) and gene duplication and loss (as modeled by a branching…

Probability · Mathematics 2020-07-15 Max Hill , Brandon Legried , Sebastien Roch

Martingales constitute a basic tool in stochastic analysis; this paper considers their application to counting processes. We use this tool to revisit a renewal theorem and its extensions for various counting processes. We first consider a…

Probability · Mathematics 2018-12-27 Daryl J. Daley , Masakiyo Miyazawa

Analysis of the convergence rates of modern convex optimization algorithms can be achived through binary means: analysis of emperical convergence, or analysis of theoretical convergence. These two pathways of capturing information diverge…

Machine Learning · Computer Science 2013-05-20 Patrick Hop , Xinghao Pan

In this paper we present results for bivariate exponential distributions which are represented by phase type distributions. The paper extends results from previous publications [5, 14] on this topic by introducing new representations that…

Performance · Computer Science 2021-08-30 Peter Buchholz

We study the dynamics of phase synchronization in growing populations of discrete phase oscillatory systems when the division process is coupled to the distribution of oscillator phases. Using mean field theory, linear stability analysis,…

Statistical Mechanics · Physics 2015-06-16 Wen Yu , Kevin B. Wood

Several numerical evaluations of the density and distribution of convolution of independent gamma variables are compared in their accuracy and speed. In application to renewal processes, an efficient formula is derived for the probability…

Computation · Statistics 2022-12-15 Chaoran Hu , Vladimir Pozdnyakov , Jun Yan

Decoupling is a recent development in Fourier analysis, which has applications in harmonic analysis, PDE, and number theory. We survey some applications of decoupling and some of the ideas in the proof. This survey is aimed at a general…

Classical Analysis and ODEs · Mathematics 2022-07-05 Larry Guth

Recurrence quantification analysis (RQA) is a widely used tool for studying complex dynamical systems, but its standard implementation requires computationally expensive calculations of recurrence plots (RPs) and line length histograms.…

Chaotic Dynamics · Physics 2026-01-06 Norbert Marwan

Numerical experiments recently discussed in the literature show that identical nonlinear chaotic systems linked by a common noise term (or signal) may synchronize after a finite time. We study the process of synchronization as function of…

chao-dyn · Physics 2009-10-28 L. Longa , E. M. F. Curado , F. A. Oliveira

We define and analyze a coalescent process as a recursive box-filling process whose genealogy is given by an ancestral time-reversed, time-inhomogeneous Bienyam\'{e}-Galton-Watson process. Special interest is on the expected size of a…

Probability · Mathematics 2017-09-25 Nicolas Grosjean , Thierry Huillet

It is known that the time until a birth and death process reaches a certain level is distributed as a sum of independent exponential random variables. Diaconis, Miclo and Swart gave a probabilistic proof of this fact by coupling the birth…

Probability · Mathematics 2017-01-20 Tobiáš Hudec

We develop a scheme to exactly evaluate the correlation energy in the random-phase approximation, based on linear response theory. It is demonstrated that our formula is completely equivalent to a contour integral representation recently…

Nuclear Theory · Physics 2009-10-31 Y. R. Shimizu , P. Donati , R. A. Broglia

Forecast reconciliation is a post-forecasting process that involves transforming a set of incoherent forecasts into coherent forecasts which satisfy a given set of linear constraints for a multivariate time series. In this paper we extend…

Methodology · Statistics 2023-12-25 Daniele Girolimetto , George Athanasopoulos , Tommaso Di Fonzo , Rob J Hyndman

Distributed storage systems with replication are well known for storing large amount of data. A large number of replication is done in order to provide reliability. This makes the system expensive. Various methods have been proposed over…

Distributed, Parallel, and Cluster Computing · Computer Science 2013-10-01 Mit Sheth , Krishna Gopal Benerjee , Manish K. Gupta

Simulating energy systems is vital for energy planning to understand the effects of fluctuating renewable energy sources and integration of multiple energy sectors. Capacity expansion is a powerful tool for energy analysts and consists of…

Systems and Control · Electrical Eng. & Systems 2020-12-21 Mette Gamst , Stefanie Buchholz , David Pisinger

We use a probabilistic approach to study the rate of convergence to equilibrium for a collisionless (Knudsen) gas in dimension equal to or larger than 2. The use of a coupling between two stochastic processes allows us to extend and refine,…

Mathematical Physics · Physics 2019-10-08 Armand Bernou , Nicolas Fournier

We consider weighted particle systems in which new generations are re-sampled from current particles with probabilities proportional to their weights. This covers a broad class of sequential Monte Carlo methods, widely used in applied…

Probability · Mathematics 2023-05-08 Sylvain Rubenthaler

The increased complexity of infrastructure systems has resulted in critical interdependencies between multiple networks---communication systems require electricity, while the normal functioning of the power grid relies on communication…

Physics and Society · Physics 2020-11-10 Michael M. Danziger , Albert-László Barabási

Compartmentalization of biochemical processes underlies all biological systems, from the organelle to the tissue scale. Theoretical models to study the interplay between noisy reaction dynamics and compartmentalization are sparse, and…

Quantitative Methods · Quantitative Biology 2022-06-08 Lorenzo Duso , Christoph Zechner

Mathematical models for flow and reactive transport in porous media often involve non-linear, degenerate parabolic equations. Their solutions have low regularity, and therefore lower order schemes are used for the numerical approximation.…

Numerical Analysis · Mathematics 2021-05-24 Jakub W. Both , Kundan Kumar , Jan M. Nordbotten , Iuliu Sorin Pop , Florin A. Radu