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We propose and analyze a stochastic model to investigate epigenetic mutations, i.e., modifications of the genetic information that control gene expression patterns in a cell but do not alter the DNA sequence. Epigenetic mutations are…

Analysis of PDEs · Mathematics 2024-07-09 Pablo Padilla-Longoria , Jesus Sierra

The use of networks to integrate different genetic, proteomic, and metabolic datasets has been proposed as a viable path toward elucidating the origins of specific diseases. Here we introduce a new phenotypic database summarizing…

Biological Physics · Physics 2015-05-14 Cesar A. Hidalgo , Nicholas Blumm , Albert-Laszlo Barabasi , Nicholas Christakis

Early detection of diseases in crops is essential to prevent harvest losses and improve the quality of the final product. In this context, the combination of machine learning and proximity sensors is emerging as a technique capable of…

Phyllotactic patterns, i.e. regular arrangements of leaves or seeds around a plant stem, are fascinating examples of complex structures encountered in Nature. In botany, their symmetries develop when a new primordium periodically grows in…

Chemical Physics · Physics 2024-10-03 Giulio Facchini , Marcello Budroni , Gabor Schuszter , Fabian Brau , Anne De Wit

Agriculture is the mainstay of human society because it is an essential need for every organism. Paddy cultivation is very significant so far as humans are concerned, largely in the Asian continent, and it is one of the staple foods.…

Computer Vision and Pattern Recognition · Computer Science 2022-08-09 Petchiammal A , Briskline Kiruba S , D. Murugan

Objectives. Sustainable management of plant diseases is an open challenge which has relevant economic and environmental impact. Optimal strategies rely on human expertise for field scouting under favourable conditions to assess the current…

Computer Vision and Pattern Recognition · Computer Science 2021-12-22 Alessandro Benfenati , Paola Causin , Roberto Oberti , Giovanni Stefanello

Accurate detection of nutrient deficiency in plant leaves is essential for precision agriculture, enabling early intervention in fertilization, disease, and stress management. This study presents a deep learning framework for leaf anomaly…

Computer Vision and Pattern Recognition · Computer Science 2025-07-21 Ji-Yan Wu , Zheng Yong Poh , Anoop C. Patil , Bongsoo Park , Giovanni Volpe , Daisuke Urano

The preservation of soil health is a critical challenge in the 21st century due to its significant impact on agriculture, human health, and biodiversity. We provide the first deep investigation of the predictive potential of machine…

Machine Learning · Statistics 2024-02-20 Rosa Aghdam , Xudong Tang , Shan Shan , Richard Lankau , Claudia Solís-Lemus

The explosion of data throughout the biomedical sciences provides unprecedented opportunities to learn about the dynamics of evolution and disease progression, but harnessing these large and diverse datasets remains challenging. Here, we…

Quantitative Methods · Quantitative Biology 2019-12-03 Sam F. Greenbury , Mauricio Barahona , Iain G. Johnston

Charcoal rot is a fungal disease that thrives in warm dry conditions and affects the yield of soybeans and other important agronomic crops worldwide. There is a need for robust, automatic and consistent early detection and quantification of…

Computer Vision and Pattern Recognition · Computer Science 2017-10-16 Koushik Nagasubramanian , Sarah Jones , Soumik Sarkar , Asheesh K. Singh , Arti Singh , Baskar Ganapathysubramanian

Models of soil organic carbon (SOC) frequently overlook the effects of spatial dimensions and microbiological activities. In this paper, we focus on two reaction-diffusion chemotaxis models for SOC dynamics, both supporting…

Numerical Analysis · Mathematics 2024-07-31 Angela Monti , Fasma Diele , Deborah Lacitignola , Carmela Marangi

The innumerable shapes of plant leaves present a challenge to the explanatory power of biophysical theory. A model is needed that can produce these shapes with a small set of parameters. This paper presents a simple model of leaf shape…

Tissues and Organs · Quantitative Biology 2010-04-27 David A. Young

Artificial intelligence has significantly advanced the automation of diagnostic processes, benefiting various fields including agriculture. This study introduces an AI-based system for the automatic diagnosis of urban street plants using…

Computer Vision and Pattern Recognition · Computer Science 2024-07-04 Marc Josep Montagut Marques , Liu Mingxin , Kuri Thomas Shiojiri , Tomika Hagiwara , Kayo Hirose , Kaori Shiojiri , Shinjiro Umezu

Animal morphogenesis often involves significant shape changes of epithelial tissue sheets. Great progress has been made in understanding the underlying cellular driving forces and their coordination through biomechanical feedback loops.…

Soft Condensed Matter · Physics 2024-09-23 Nikolas H. Claussen , Fridtjof Brauns

An accurate and timely detection of diseases and pests in rice plants can help farmers in applying timely treatment on the plants and thereby can reduce the economic losses substantially. Recent developments in deep learning based…

Computer Vision and Pattern Recognition · Computer Science 2020-04-15 Chowdhury Rafeed Rahman , Preetom Saha Arko , Mohammed Eunus Ali , Mohammad Ashik Iqbal Khan , Sajid Hasan Apon , Farzana Nowrin , Abu Wasif

Predicting whether a chemical structure shares a desired biological effect can have a significant impact for in-silico compound screening in early drug discovery. In this study, we developed a deep learning model where compound structures…

Quantitative Methods · Quantitative Biology 2020-04-03 C. Fotis , N. Meimetis , A. Sardis , L. G. Alexopoulos

In this paper, we develop a sharp interface tumor growth model to study the effect of the tumor microenvironment using a complex far-field geometry that mimics a heterogeneous distribution of vasculature. Together with different nutrient…

Numerical Analysis · Mathematics 2020-03-20 Min-Jhe Lu , Chun Liu , John Lowengrub , Shuwang Li

In the field of image-based drug discovery, capturing the phenotypic response of cells to various drug treatments and perturbations is a crucial step. However, existing methods require computationally extensive and complex multi-step…

Machine Learning · Computer Science 2025-02-28 Bo Li , Bob Zhang , Chengyang Zhang , Minghao Zhou , Weiliang Huang , Shihang Wang , Qing Wang , Mengran Li , Yong Zhang , Qianqian Song

In the last decades, the area under cultivation of maize products has increased because of its essential role in the food cycle for humans, livestock, and poultry. Moreover, the diseases of plants impact food safety and can significantly…

Computer Vision and Pattern Recognition · Computer Science 2022-05-10 Saeedeh Osouli , Behrouz Bolourian Haghighi , Ehsan Sadrossadat

Plant diseases are considered one of the main factors influencing food production and minimize losses in production, and it is essential that crop diseases have fast detection and recognition. The recent expansion of deep learning methods…

Computer Vision and Pattern Recognition · Computer Science 2020-09-10 Andre S. Abade , Paulo Afonso Ferreira , Flavio de Barros Vidal