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This paper addresses the problem of identifying the graph structure of a dynamical network using measured input/output data. This problem is known as topology identification and has received considerable attention in recent literature. Most…

Optimization and Control · Mathematics 2020-05-08 Henk J. van Waarde , Pietro Tesi , M. Kanat Camlibel

The problem of unsupervised learning node embeddings in graphs is one of the important directions in modern network science. In this work we propose a novel framework, which is aimed to find embeddings by \textit{discriminating…

Machine Learning · Statistics 2020-01-24 Stanislav Tsepa , Maxim Panov

In this work, Transition Probability Matrix (TPM) is proposed as a new method for extracting the features of nodes in the graph. The proposed method uses random walks to capture the connectivity structure of a node's close neighborhood. The…

Machine Learning · Computer Science 2023-03-07 Sarmad N. Mohammed , Semra Gündüç

The manifold hypothesis, which assumes that data lies on or close to an unknown manifold of low intrinsic dimension, is a staple of modern machine learning research. However, recent work has shown that real-world data exhibits distinct…

Machine Learning · Computer Science 2023-06-16 Julius von Rohrscheidt , Bastian Rieck

Studying how embeddings are organized in space not only enhances model interpretability but also uncovers factors that drive downstream task performance. In this paper, we present a comprehensive analysis of topological and geometric…

Machine Learning · Computer Science 2025-12-02 Florian Rottach , William Rudman , Bastian Rieck , Harrisen Scells , Carsten Eickhoff

We explore pseudometrics for directed graphs in order to better understand their topological properties. The directed flag complex associated to a directed graph provides a useful bridge between network science and topology. Indeed, it has…

Algebraic Topology · Mathematics 2021-07-26 Ana Lucia Garcia-Pulido , Kathryn Hess , Jane Tan , Katharine Turner , Bei Wang , Naya Yerolemou

Many applications, ranging from natural to social sciences, rely on graphlet analysis for the intuitive and meaningful characterization of networks employing micro-level structures as building blocks. However, it has not been thoroughly…

Social and Information Networks · Computer Science 2023-06-06 Colin Cleveland , Chin-Yen Lee , Shen-Fu Tsai , Wei-Hsuan Yu , Hsuan-Wei Lee

The graph identification problem consists of discovering the interactions among nodes in a network given their state/feature trajectories. This problem is challenging because the behavior of a node is coupled to all the other nodes by the…

Systems and Control · Electrical Eng. & Systems 2023-10-24 Eduardo Sebastian , Thai Duong , Nikolay Atanasov , Eduardo Montijano , Carlos Sagues

Higher-order connectivity patterns such as small induced sub-graphs called graphlets (network motifs) are vital to understand the important components (modules/functional units) governing the configuration and behavior of complex networks.…

Social and Information Networks · Computer Science 2020-09-15 Aldo G. Carranza , Ryan A. Rossi , Anup Rao , Eunyee Koh

We present a way to apply topological data analysis for classifying encrypted bits into distinct classes. Persistent homology is applied to generate topological features of a point cloud obtained from sets of encryptions. We see that this…

Cryptography and Security · Computer Science 2023-01-19 Jayati Kaushik , Aaruni Kaushik , Upasana Parashar

Graph embedding provides a feasible methodology to conduct pattern classification for graph-structured data by mapping each data into the vectorial space. Various pioneering works are essentially coding method that concentrates on a…

Machine Learning · Computer Science 2022-10-04 Xue Liu , Dan Sun , Xiaobo Cao , Hao Ye , Wei Wei

Many datasets take the form of a bipartite graph where two types of nodes are connected by relationships, like the movies watched by a user or the tags associated with a file. The partitioning of the bipartite graph could be used to fasten…

Information Retrieval · Computer Science 2021-10-01 Gaëlle Candel , David Naccache

Spectral clustering has gained importance in recent years due to its ability to cluster complex data as it requires only pairwise similarity among data points with its ease of implementation. The central point in spectral clustering is the…

Computer Vision and Pattern Recognition · Computer Science 2017-04-11 Lalith Srikanth Chintalapati , Raghunatha Sarma Rachakonda

In this survey, we explore recent literature on finding the cores of higher graphs using geometric and topological means. We study graphs, hypergraphs, and simplicial complexes, all of which are models of higher graphs. We study the notion…

History and Overview · Mathematics 2025-06-30 Inés García-Redondo , Claudia Landi , Sarah Percival , Anda Skeja , Bei Wang , Ling Zhou

Topology applied to real world data using persistent homology has started to find applications within machine learning, including deep learning. We present a differentiable topology layer that computes persistent homology based on level set…

Patterns stored within pre-trained deep neural networks compose large and powerful descriptive languages that can be used for many different purposes. Typically, deep network representations are implemented within vector embedding spaces,…

Neural and Evolutionary Computing · Computer Science 2017-08-10 Dario Garcia-Gasulla , Armand Vilalta , Ferran Parés , Jonatan Moreno , Eduard Ayguadé , Jesus Labarta , Ulises Cortés , Toyotaro Suzumura

A detection system, modeled in a graph, is composed of "detectors" positioned at a subset of vertices in order to uniquely locate an ``intruder" at any vertex. \emph{Identifying codes} use detectors that can sense the presence or absence of…

Combinatorics · Mathematics 2021-12-06 Devin C. Jean , Suk J. Seo

Legal documents pose unique challenges for text classification due to their domain-specific language and often limited labeled data. This paper proposes a hybrid approach for classifying legal texts by combining unsupervised topic and graph…

Machine Learning · Statistics 2025-09-03 Deepak Bastola , Woohyeok Choi

Feature extraction and dimension reduction for networks is critical in a wide variety of domains. Efficiently and accurately learning features for multiple graphs has important applications in statistical inference on graphs. We propose a…

Applications · Statistics 2021-06-23 Shangsi Wang , Jesús Arroyo , Joshua T. Vogelstein , Carey E. Priebe

Real data is often given as a point cloud, i.e. a finite set of points with pairwise distances between them. An important problem is to detect the topological shape of data --- for example, to approximate a point cloud by a low-dimensional…

Algebraic Topology · Mathematics 2018-10-09 Sara Kalisnik Verovsek , Vitaliy Kurlin , Davorin Lesnik