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Topological data analysis (TDA) provides a set of data analysis tools for extracting embedded topological structures from complex high-dimensional datasets. In recent years, TDA has been a rapidly growing field which has found success in a…

Methodology · Statistics 2022-03-09 Xiaojun Zheng , Simon Mak , Liyan Xie , Yao Xie

Representation learning on graphs is a fundamental problem that can be crucial in various tasks. Graph neural networks, the dominant approach for graph representation learning, are limited in their representation power. Therefore, it can be…

Machine Learning · Computer Science 2025-01-17 Zuoyu Yan , Qi Zhao , Ze Ye , Tengfei Ma , Liangcai Gao , Zhi Tang , Yusu Wang , Chao Chen

Graph representation learning (also known as network embedding) has been extensively researched with varying levels of granularity, ranging from nodes to graphs. While most prior work in this area focuses on node-level representation,…

Machine Learning · Computer Science 2023-06-05 Lili Wang , Chenghan Huang , Weicheng Ma , Xinyuan Cao , Soroush Vosoughi

Embedding the nodes of a large network into an Euclidean space is a common objective in modern machine learning, with a variety of tools available. These embeddings can then be used as features for tasks such as community detection/node…

Machine Learning · Statistics 2024-10-23 Andrew Davison , S. Carlyle Morgan , Owen G. Ward

Traditionally, graph quality metrics focus on readability, but recent studies show the need for metrics which are more specific to the discovery of patterns in graphs. Cluster analysis is a popular task within graph analysis, yet there is…

Data Structures and Algorithms · Computer Science 2019-08-22 Amyra Meidiana , Seok-Hee Hong , Peter Eades , Daniel Keim

Many real-world and artificial systems and processes can be represented as graphs. Some examples of such systems include social networks, financial transactions, supply chains, and molecular structures. In many of these cases, one needs to…

Machine Learning · Computer Science 2025-03-21 Ashkan Dehghan , Paweł Prałat , François Théberge

Graph models help understand network dynamics and evolution. Creating graphs with controlled topology and embedded partitions is a common strategy for evaluating community detection algorithms. However, existing benchmarks often overlook…

Social and Information Networks · Computer Science 2025-10-09 Laurent Brisson , Cécile Bothorel , Nicolas Duminy

Graphs are nowadays ubiquitous in the fields of signal processing and machine learning. As a tool used to express relationships between objects, graphs can be deployed to various ends: I) clustering of vertices, II) semi-supervised…

Machine Learning · Computer Science 2020-07-17 Carlos Lassance , Vincent Gripon , Gonzalo Mateos

Graph neural networks (GNNs) are a powerful architecture for tackling graph learning tasks, yet have been shown to be oblivious to eminent substructures such as cycles. We present TOGL, a novel layer that incorporates global topological…

Machine Learning · Computer Science 2022-03-18 Max Horn , Edward De Brouwer , Michael Moor , Yves Moreau , Bastian Rieck , Karsten Borgwardt

A clustering algorithm partitions a set of data points into smaller sets (clusters) such that each subset is more tightly packed than the whole. Many approaches to clustering translate the vector data into a graph with edges reflecting a…

Geometric Topology · Mathematics 2012-06-06 Jesse Johnson

In this study, we present a method of pattern mining based on network theory that enables the identification of protein structures or complexes from synthetic volume densities, without the knowledge of predefined templates or human biases…

Quantitative Methods · Quantitative Biology 2022-10-18 August George , Doo Nam Kim , Trevor Moser , Ian T. Gildea , James E. Evans , Margaret S. Cheung

Graph matching can be formalized as a combinatorial optimization problem, where there are corresponding relationships between pairs of nodes that can be represented as edges. This problem becomes challenging when there are potential…

Computer Vision and Pattern Recognition · Computer Science 2023-01-06 Dongdong Chen , Yuxing Dai , Lichi Zhang , Zhihong Zhang

The paper presents a new model for single channel images low-level interpretation. The image is decomposed into a graph which captures a complete set of structural features. The description allows to accurately identify every edge location…

Computer Vision and Pattern Recognition · Computer Science 2019-04-23 Alessandro Dal Palu'

Due to the advent of the expressions of data other than tabular formats, the topological compositions which make samples interrelated came into prominence. Analogically, those networks can be interpreted as social connections, dataflow…

Social and Information Networks · Computer Science 2023-01-27 Hacı İsmail Aslan , Chang Choi , Hoon Ko

Contour detection has been a fundamental component in many image segmentation and object detection systems. Most previous work utilizes low-level features such as texture or saliency to detect contours and then use them as cues for a…

Computer Vision and Pattern Recognition · Computer Science 2015-04-24 Gedas Bertasius , Jianbo Shi , Lorenzo Torresani

The constraint of neighborhood consistency or local consistency is widely used for robust image matching. In this paper, we focus on learning neighborhood topology consistent descriptors (TCDesc), while former works of learning descriptors,…

Computer Vision and Pattern Recognition · Computer Science 2020-09-16 Honghu Pan , Fanyang Meng , Nana Fan , Zhenyu He

Most existing popular methods for learning graph embedding only consider fixed-order global structural features and lack structures hierarchical representation. To address this weakness, we propose a novel graph embedding algorithm named…

Machine Learning · Computer Science 2021-02-03 Xue Liu , Wei Wei , Xiangnan Feng , Xiaobo Cao , Dan Sun

In this position paper, we argue that when hypergraphs are used to capture multi-way local relations of data, their resulting topological features describe global behaviour. Consequently, these features capture complex correlations that can…

Persistent homology, a technique from computational topology, has recently shown strong empirical performance in the context of graph classification. Being able to capture long range graph properties via higher-order topological features,…

Machine Learning · Computer Science 2024-12-20 Rubén Ballester , Bastian Rieck

The optimal strategy for community detection in complex networks is not universal, but depends critically on the network's underlying structural properties. Although popular graph-theoretic methods, such as Louvain, optimize for modularity,…

Social and Information Networks · Computer Science 2025-12-15 Jelena Losic
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