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Quantification of tissue parameters using MRI is emerging as a powerful tool in clinical diagnosis and research studies. The need for multiple long scans with different acquisition parameters prohibits quantitative MRI from reaching…

Quantitative Methods · Quantitative Biology 2024-08-07 Amir Heydari , Abbas Ahmadi , Tae Hyung Kim , Berkin Bilgic

Diffusion magnetic resonance imaging (dMRI) and tractography provide means to study the anatomical structures within the white matter of the brain. When studying tractography data across subjects, it is usually necessary to align, i.e. to…

Machine Learning · Statistics 2016-02-01 Thien Bao Nguyen , Emanuele Olivetti , Paolo Avesani

Spatial Transcriptomics (ST) enables the measurement of gene expression while preserving spatial information, offering critical insights into tissue architecture and disease pathology. Recent developments have explored the use of…

Computer Vision and Pattern Recognition · Computer Science 2026-05-20 Hai Dang Nguyen , Nguyen Dang Huy Pham , The Minh Duc Nguyen , Dac Thai Nguyen , Hang Thi Nguyen , Duong M. Nguyen

For an effective application of compressed sensing (CS), which exploits the underlying compressibility of an image, one of the requirements is that the undersampling artifact be incoherent (noise-like) in the sparsifying transform domain.…

Signal Processing · Electrical Eng. & Systems 2022-06-09 Mihir Joshi , Aaron Pruitt , Chong Chen , Yingmin Liu , Rizwan Ahmad

Purpose: To develop a method that adaptively generates tiny dictionaries for joint T1-T2 mapping. Theory: This work breaks the bond between dictionary size and representation accuracy (i) by approximating the Bloch-response manifold by…

Medical Physics · Physics 2021-01-11 Volkert Roeloffs , Martin Uecker , Jens Frahm

Myocardial motion and deformation are rich descriptors that characterize cardiac function. Image registration, as the most commonly used technique for myocardial motion tracking, is an ill-posed inverse problem which often requires prior…

Image and Video Processing · Electrical Eng. & Systems 2022-06-09 Chen Qin , Shuo Wang , Chen Chen , Wenjia Bai , Daniel Rueckert

Cardiac magnetic resonance parametric T1 maps are typically reconstructed using non-linear fitting. However this method has limitations due to the high computational cost and robustness. In this study, a recurrent neural network (RNN) is…

Image and Video Processing · Electrical Eng. & Systems 2019-07-30 Nicola Martini , Alessio Vatti , Andrea Ripoli , Sara Salaris , Gianmarco Santini , Maria Filomena Santarelli , Dante Chiappino , Daniele Della Latta

Purpose: To improve the accuracy of multiparametric estimation, including myelin water fraction (MWF) quantification, and reduce scan time in 3D-QALAS by optimizing sequence parameters, using a self-supervised multilayer perceptron network.…

Ultrasound is well-established as an imaging modality for diagnostic and interventional purposes. However, the image quality varies with operator skills as acquiring and interpreting ultrasound images requires extensive training due to the…

Purpose: To propose a B1+ mapping technique for imaging of body parts containing metal hardware, based on magnitude images acquired with turbo spin echo (TSE) pulse sequences. Theory and Methods: To encode the underlying B1+, multiple (two…

Medical Physics · Physics 2025-01-13 Iman Khodarahmi , Mary Bruno , Ran Schwarzkopf , Jan Fritz , Mahesh B. Keerthivasan

Purpose: Echo modulation curve (EMC) modeling can provide accurate and reproducible quantification of T2 relaxation times. The standard EMC-T2 mapping framework, however, requires sufficient echoes and cumbersome pixel-wise…

Image and Video Processing · Electrical Eng. & Systems 2024-03-01 Haoyang Pei , Timothy M. Shepherd , Yao Wang , Fang Liu , Daniel K Sodickson , Noam Ben-Eliezer , Li Feng

Magnetic particle imaging (MPI) is a rapidly developing medical imaging modality that exploits the non-linear response of magnetic nanoparticles (MNPs). Color MPI widens the functionality of MPI, empowering it with the capability to…

Signal Processing · Electrical Eng. & Systems 2021-12-10 M. Tunç Arslan , A. Alper Özaslan , Semih Kurt , Yavuz Muslu , Emine Ulku Saritas

$\textbf{Purpose:}$ To develop a new method for free-breathing 3D extracellular volume (ECV) mapping of the whole heart at 3T. $\textbf{Methods:}$ A free-breathing 3D cardiac ECV mapping method was developed at 3T. T1 mapping was performed…

Novel methods for quantitative, transient-state multiparametric imaging are increasingly being demonstrated for assessment of disease and treatment efficacy. Here, we build on these by assessing the most common Non-Cartesian readout…

Purpose: To introduce a novel deep learning based approach for fast and high-quality dynamic multi-coil MR reconstruction by learning a complementary time-frequency domain network that exploits spatio-temporal correlations simultaneously…

Image and Video Processing · Electrical Eng. & Systems 2021-06-21 Chen Qin , Jinming Duan , Kerstin Hammernik , Jo Schlemper , Thomas Küstner , René Botnar , Claudia Prieto , Anthony N. Price , Joseph V. Hajnal , Daniel Rueckert

There are large individual differences in physiological processes, making designing personalized health sensing algorithms challenging. Existing machine learning systems struggle to generalize well to unseen subjects or contexts and can…

Computer Vision and Pattern Recognition · Computer Science 2021-03-09 Xin Liu , Ziheng Jiang , Josh Fromm , Xuhai Xu , Shwetak Patel , Daniel McDuff

While drastic improvements in CT technology have occurred in the past 25 years, spatial resolution is one area where progress has been limited until recently. New photon counting CT systems, are capable of much better spatial resolution…

Population imaging studies rely upon good quality medical imagery before downstream image quantification. This study provides an automated approach to assess image quality from cardiovascular magnetic resonance (CMR) imaging at scale. We…

Image and Video Processing · Electrical Eng. & Systems 2025-10-28 Shahabedin Nabavi , Hossein Simchi , Mohsen Ebrahimi Moghaddam , Alejandro F. Frangi , Ahmad Ali Abin

Accelerating the acquisition of magnetic resonance imaging (MRI) is a challenging problem, and many works have been proposed to reconstruct images from undersampled k-space data. However, if the main purpose is to extract certain…

Image and Video Processing · Electrical Eng. & Systems 2019-08-22 Chen Qin , Wenjia Bai , Jo Schlemper , Steffen E. Petersen , Stefan K. Piechnik , Stefan Neubauer , Daniel Rueckert

The oscillations of the human heart rate are inherently complex and non-linear -- they are best described by mathematical chaos, and they present a challenge when applied to the practical domain of cardiovascular health monitoring in…

Machine Learning · Computer Science 2025-11-03 Berken Utku Demirel , Christian Holz
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