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In complex systems, groups of interacting objects may form prevalent and persistent spatiotemporal patterns, which we refer to as motifs. These motifs can exhibit features that reveal how individual objects interact with one another.…

Biological Physics · Physics 2025-12-12 Ying Chen Lim , Rakesh Das , Tetsuya Hiraiwa , N. Duane Loh

Non-equilibrium processes which convert chemical energy into mechanical motion enable the motility of organisms. Bundles of inextensible filaments driven by energy transduction of molecular motors form essential components of micron-scale…

Soft Condensed Matter · Physics 2013-06-13 Abhrajit Laskar , Rajeev Singh , Somdeb Ghose , Gayathri Jayaraman , P. B. Sunil Kumar , R. Adhikari

Adaptation to environmental change is a common property of biological systems. Cells initially respond to external changes in the environment, but after some time, they regain their original state. By considering an element consisting of…

Biological Physics · Physics 2015-05-13 Masayo Inoue , Kunihiko Kaneko

Rhythmogenesis, which is critical for many biological functions, involves a transition to coherent activity through cell-cell communication. In the absence of centralized coordination by specialized cells (pacemakers), competing oscillating…

Adaptation and Self-Organizing Systems · Physics 2019-12-17 Ria Ghosh , Pavithraa Seenivasan , Shakti N. Menon , S. Sridhar , Nicolas B. Garnier , Alain Pumir , Sitabhra Sinha

Emergence of regular spatial patterns is a hallmark in living matter ranging from subcellular organelles to developing embryos and to ecosystems. Mechanisms for the formation of ordered spatial patterns in biology often require chemical…

Biological Physics · Physics 2024-03-15 Haoran Xu , Yilin Wu

The spontaneous formation of patterns in dynamical systems is a rich phenomenon that transcends scientific boundaries. Here, we report our observation of coupled optical-atomic pattern formation, which results in the creation of…

Atomic Physics · Physics 2016-10-17 Bonnie L. Schmittberger , Daniel J. Gauthier

We present a general dynamical theory of a membrane coupled to an actin cortex containing polymerizing filaments with active stresses and currents, and demonstrate that active membrane dynamics [Phys. Rev. Lett \textbf{84}, 3494 (2000)] and…

Biological Physics · Physics 2015-06-18 Ananyo Maitra , Pragya Srivastava , Madan Rao , Sriram Ramaswamy

Most previous studies on coupled dynamical systems assume that all interactions between oscillators take place uniformly in time, but in reality, this does not necessarily reflect the usual scenario. The heterogeneity in the timings of such…

Adaptation and Self-Organizing Systems · Physics 2021-05-26 Shiva Dixit , Sayantan Nag Chowdhury , Dibakar Ghosh , Manish Dev Shrimali

One of the defining features of active nematics is that above a critical activity the quiescent state becomes unstable to a distorted, flowing one. We show that spatial variations in activity can fundamentally change the nature of this…

Soft Condensed Matter · Physics 2025-12-15 Alexander J. H. Houston , Michael Grinfeld , Geoff McKay , Nigel J. Mottram

Neurons are often connected, spatially and temporally, in phenomenal ways that promote wave propagation. Therefore, it is essential to analyze the emergent spatiotemporal patterns to understand the working mechanism of brain activity,…

Pattern Formation and Solitons · Physics 2021-10-04 Argha Mondal , Chittaranjan Hens , Arnab Mondal , Chris G. Antonopoulos

In living cells, cycles of formation and dissolution of liquid droplets can mediate biological functions such as DNA repair. However, the minimal physicochemical prerequisite for such droplet oscillations remains elusive. Here, we present a…

Soft Condensed Matter · Physics 2025-03-17 Ivar S. Haugerud , Hidde D. Vuijk , Job Boekhoven , Christoph A. Weber

Electrical waves in the heart form rotating spiral or scroll waves during life-threatening arrhythmias such as atrial or ventricular fibrillation. The wave dynamics are typically modeled using coupled partial differential equations, which…

Medical Physics · Physics 2024-10-07 Tanish Baranwal , Jan Lebert , Jan Christoph

This work concerns a many-body deterministic model that displays life-like properties as emergence, complexity, self-organization, spontaneous compartmentalization, and self-regulation. The model portraits the dynamics of an ensemble of…

Adaptation and Self-Organizing Systems · Physics 2023-07-11 Alessandro Scirè , Valerio Annovazzi-Lodi

Rhythmic activities that alternate between coherent and incoherent phases are ubiquitous in chemical, ecological, climate, or neural systems. Despite their importance, general mechanisms for their emergence are little understood. In order…

Adaptation and Self-Organizing Systems · Physics 2022-06-01 Max Thiele , Rico Berner , Peter A. Tass , Eckehard Schöll , Serhiy Yanchuk

In this paper, we report on the generation and propagation of traveling pulses in a homogeneous network of diffusively coupled, excitable, slow-fast dynamical neurons. The spatially extended system is modelled using the nearest neighbor…

Pattern Formation and Solitons · Physics 2024-06-19 Arnab Mondal , Argha Mondal , M. A. Aziz-Alaoui , Ranjit Kumar Upadhyay , Sanjeev Kumar Sharma , Chris G. Antonopoulos

Coupled oscillators have been used to study synchronization in a wide range of social, biological, and physical systems, including pedestrian-induced bridge resonances, coordinated lighting up of firefly swarms, and enhanced output peak…

Adaptation and Self-Organizing Systems · Physics 2021-11-01 Can Xu , Xiaohuan Tang , Huaping Lü , Karin Alfaro-Bittner , Stefano Boccaletti , Matjaz Perc , Shuguang Guan

Mechanical oscillations are important for many cellular processes, e.g. the beating of cilia and flagella or the sensation of sound by hair cells. These dynamic states originate from spontaneous oscillations of molecular motors. A…

Biological Physics · Physics 2009-01-29 Stefan Gunther , Karsten Kruse

Amoeboid cell migration is characterized by frequent changes of the direction of motion and resembles a persistent random walk on long time scales. Although it is well known that cell migration is typically driven by the actin cytoskeleton,…

Biological Physics · Physics 2021-06-09 Nicolas Ecker , Karsten Kruse

We study a system of phase oscillators with nonlocal coupling in a ring that supports self-organized patterns of coherence and incoherence, called chimera states. Introducing a global feedback loop, connecting the phase lag to the order…

Chaotic Dynamics · Physics 2015-08-03 Matthias Wolfrum , Oleh Omel'chenko , Jan Sieber

Flow networks are essential for both living organisms and enginneered systems. These networks often present complex dynamics controlled, at least in part, by their topology. Previous works have shown that topologically complex networks…

Soft Condensed Matter · Physics 2020-03-24 Miguel Ruiz-Garcia , Eleni Katifori