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Retrieval systems are increasingly used in biomedical and clinical natural language processing applications, yet practical guidance for researchers building such systems is limited. In this work, we provide such guidance through an…

Information Retrieval · Computer Science 2026-04-24 Hayk Stepanyan , Matthew McDermott

Structure-based virtual screening (SBVS) is a key workflow in computational drug discovery. SBVS models are assessed by measuring the enrichment of known active molecules over decoys in retrospective screens. However, the standard formula…

Quantitative Methods · Quantitative Biology 2024-03-18 Michael Brocidiacono , Konstantin I. Popov , Alexander Tropsha

Real-world black-box optimization often involves time-consuming or costly experiments and simulations. Multi-fidelity optimization (MFO) stands out as a cost-effective strategy that balances high-fidelity accuracy with computational…

Machine Learning · Computer Science 2024-02-16 Ke Li , Fan Li

This paper introduces an efficient Vision-Language Model (VLM) pipeline specifically optimized for deployment on embedded devices, such as those used in robotics and autonomous driving. The pipeline significantly reduces the computational…

Machine Learning · Computer Science 2025-11-04 Jin Huang , Yuchao Jin , Le An , Josh Park

Hyperparameter tuning of multi-stage pipelines introduces a significant computational burden. Motivated by the observation that work can be reused across pipelines if the intermediate computations are the same, we propose a pipeline-aware…

Machine Learning · Computer Science 2019-03-14 Liam Li , Evan Sparks , Kevin Jamieson , Ameet Talwalkar

Many selection processes such as finding patients qualifying for a medical trial or retrieval pipelines in search engines consist of multiple stages, where an initial screening stage focuses the resources on shortlisting the most promising…

Machine Learning · Computer Science 2022-06-14 Lequn Wang , Thorsten Joachims , Manuel Gomez Rodriguez

Unsupervised Video Object Segmentation (UVOS) aims at discovering objects and tracking them through videos. For accurate UVOS, we observe if one can locate precise segment proposals on key frames, subsequent processes are much simpler.…

Computer Vision and Pattern Recognition · Computer Science 2023-01-31 Jialin Yuan , Jay Patravali , Hung Nguyen , Chanho Kim , Li Fuxin

High-Efficiency Video Coding (HEVC) surpasses its predecessors in encoding efficiency by introducing new coding tools at the cost of an increased encoding time-complexity. The Coding Tree Unit (CTU) is the main building block used in HEVC.…

Multimedia · Computer Science 2021-09-07 Ekrem Cetinkaya , Hadi Amirpour , Mohammad Ghanbari , Christian Timmerer

The current bulk materials discovery cycle has several inefficiencies from initial computational predictions through fabrication and analyses. Materials are generally evaluated in a singular fashion, relying largely on human-driven…

Materials Science · Physics 2021-02-12 Olivia F. Dippo , Kevin R. Kaufmann , Kenneth S. Vecchio

Multi-view Stereo (MVS) with known camera parameters is essentially a 1D search problem within a valid depth range. Recent deep learning-based MVS methods typically densely sample depth hypotheses in the depth range, and then construct…

Computer Vision and Pattern Recognition · Computer Science 2021-12-07 Zhenxing Mi , Di Chang , Dan Xu

As machine learning techniques become ubiquitous, the efficiency of neural network implementations is becoming correspondingly paramount. Frameworks, such as Halide and TVM, separate out the algorithmic representation of the network from…

Machine Learning · Computer Science 2020-12-01 Benoit Steiner , Chris Cummins , Horace He , Hugh Leather

Decision rules offer a rich and tractable framework for solving certain classes of multistage adaptive optimization problems. Recent literature has shown the promise of using linear and nonlinear decision rules in which wait-and-see…

Optimization and Control · Mathematics 2022-11-24 Said Rahal , Dimitri J. Papageorgiou , Zukui Li

We propose, implement, and experimentally evaluate a runtime middleware to support high-throughput execution on hybrid cluster machines of large-scale analysis applications. A hybrid cluster machine consists of computation nodes which have…

Distributed, Parallel, and Cluster Computing · Computer Science 2012-09-18 George Teodoro , Tony Pan , Tahsin M. Kurc , Jun Kong , Lee A. D. Cooper , Joel H. Saltz

In structure-based drug discovery, virtual screening using conventional molecular docking methods can be performed rapidly but suffers from limitations in prediction accuracy. Recently, Boltz-2 was proposed, achieving extremely high…

Biomolecules · Quantitative Biology 2025-08-26 Kairi Furui , Masahito Ohue

Real-time visibility determination in expansive or dynamically changing environments has long posed a significant challenge in computer graphics. Existing techniques are computationally expensive and often applied as a precomputation step…

Graphics · Computer Science 2025-09-30 Xiangyu Wang , Thomas Köhler , Jun Lin Qiu , Shohei Mori , Markus Steinberger , Dieter Schmalstieg

Data science relies on pipelines that are organized in the form of interdependent computational steps. Each step consists of various candidate algorithms that maybe used for performing a particular function. Each algorithm consists of…

Computer Vision and Pattern Recognition · Computer Science 2019-03-04 Aritra Chowdhury , Malik Magdon-Ismail , Bulent Yener

In this paper, we propose a new open-source benchmarking framework for Visual Geo-localization (VG) that allows to build, train, and test a wide range of commonly used architectures, with the flexibility to change individual components of a…

Computer Vision and Pattern Recognition · Computer Science 2023-06-13 Gabriele Berton , Riccardo Mereu , Gabriele Trivigno , Carlo Masone , Gabriela Csurka , Torsten Sattler , Barbara Caputo

Data scientists seeking a good supervised learning model on a new dataset have many choices to make: they must preprocess the data, select features, possibly reduce the dimension, select an estimation algorithm, and choose hyperparameters…

Machine Learning · Computer Science 2020-06-11 Chengrun Yang , Jicong Fan , Ziyang Wu , Madeleine Udell

AlphaEvolve and FunSearch have demonstrated the potential of combining large language models (LLMs) with evolutionary search for automated algorithm discovery. However, discovery success is shaped not only by model capability but also…

Software Engineering · Computer Science 2026-05-18 Yoichi Ishibashi , Taro Yano , Masafumi Oyamada

In many applications, ranging from logistics to engineering, a designer is faced with a sequence of optimization tasks for which the objectives are in the form of black-box functions that are costly to evaluate. Furthermore, higher-fidelity…

Machine Learning · Computer Science 2025-01-09 Yunchuan Zhang , Sangwoo Park , Osvaldo Simeone
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