Related papers: Quasi-Best Match Graphs
We present a graph model for a background independent, relational approach to spacetime emergence. The general idea and the graph main features, detailed in [1], are discussed. This is a combinatorial (dynamical) metric graph, colored on…
The problems studied in this paper originate from Graph Motif, a problem introduced in 2006 in the context of biological networks. Informally speaking, it consists in deciding if a multiset of colors occurs in a connected subgraph of a…
In this paper, we initiate a systematic study on a new notion called near optimal colourability which is closely related to perfect graphs and the Lov{\'a}sz theta function. A graph family $\mathcal{G}$ is {\em near optimal colourable} if…
Applying a method to reconstruct a phylogenetic tree from random data provides a way to detect whether that method has an inherent bias towards certain tree `shapes'. For maximum parsimony, applied to a sequence of random 2-state data, each…
In this study, the Rank Genetic Algorithm was adapted to address a problem in the field of Chromatic Graph Theory, namely, on the parameter called the connected-pseudoachromatic index. We successfully improved several previously known…
A Neighborhood Balanced Coloring (NBC) of a graph is a red-blue coloring where each vertex has the same number of red and blue neighbors. This work proves that determining if a graph admits an NBC is NP-complete. We present a genetic…
A subgraph of an edge-coloured graph is called rainbow if all its edges have different colours. We prove a rainbow version of the blow-up lemma of Koml\'os, S\'ark\"ozy and Szemer\'edi that applies to almost optimally bounded colourings. A…
Building on prior work that established Matrix Quasi-tree Theorems for special embedded graphs, in this paper, we develop a comprehensive theory applicable to all embedded graphs. We introduce symbolic skew-adjacency matrices and reduction…
Quasi-isometry is a measure of how similar two graphs are at `large-scale'. Nguyen, Scott, and Seymour [arXiv:2501.09839] and Hickingbotham [arXiv:2501.10840] independently gave a characterisation of graphs quasi-isometric to graphs of…
Many of the commonly used methods for orthology detection start from mutually most similar pairs of genes (reciprocal best hits) as an approximation for evolutionary most closely related pairs of genes (reciprocal best matches). This…
The central theorem of topological graph theory states that the graph minor relation is a well-quasi-order on graphs. It has far-reaching consequences, in particular in the study of graph structures and the design of (parameterized)…
Phylogenetic networks generalise phylogenetic trees and allow for the accurate representation of the evolutionary history of a set of present-day species whose past includes reticulate events such as hybridisation and lateral gene transfer.…
We show that the fundamental groups of any two closed irreducible non-geometric graph-manifolds are quasi-isometric. This answers a question of Kapovich and Leeb. We also classify the quasi-isometry types of fundamental groups of…
Horizontal gene transfer is an important contributor to evolution. According to Walter M.\ Fitch, two genes are xenologs if they are separated by at least one HGT. More formally, the directed Fitch graph has a set of genes is its vertices,…
Motivated by investigations of rainbow matchings in edge colored graphs, we introduce the notion of color-line graphs that generalizes the classical concept of line graphs in a natural way. Let $H$ be a (properly) edge-colored graph. The…
We present a hereditary class of graphs of unbounded clique-width which is well-quasi-ordered by the induced subgraph relation. This result provides a negative answer to the question asked by Daligault, Rao and Thomass\'e in…
We propose a family of near-metrics based on local graph diffusion to capture similarity for a wide class of data sets. These quasi-metametrics, as their names suggest, dispense with one or two standard axioms of metric spaces, specifically…
Phylogenetic networks which are, as opposed to trees, suitable to describe processes like hybridization and horizontal gene transfer, play a substantial role in evolutionary research. However, while non-treelike events need to be taken into…
Given n red and n blue points in general position in the plane, it is well-known that there is a perfect matching formed by non-crossing line segments. We characterize the bichromatic point sets which admit exactly one non-crossing…
A quasisymmetric graph is a curve whose projection onto a line is a quasisymmetric map. We show that this class of curves is related to solutions of the reduced Beltrami equation and to a generalization of the Zygmund class $\Lambda_*$.…