Related papers: Optimal pebbling of complete binary trees and a me…
In this paper, we define the bi-periodic Fibonacci matrix sequence that represent bi-periodic Fibonacci numbers. Then, we investigate generating function, Binet formula and summations of bi-periodic Fibonacci matrix sequence. After that, we…
In this paper, we construct Pell matrices, analogous to Fibonacci matrices, to study algebraic properties of Pell numbers via linear algebra. This framework yields identities involving the trace, inverse, and determinant, as well as matrix…
We study fragmentation trees of Gibbs type. In the binary case, we identify the most general Gibbs-type fragmentation tree with Aldous' beta-splitting model, which has an extended parameter range $\beta>-2$ with respect to the ${\rm…
Phylogenetically decisive collections of taxon sets have the property that if trees are chosen for each of their elements, as long as these trees are compatible, the resulting supertree is unique. This means that as long as the trees…
In this paper we investigate an extremal problem on binary phylogenetic trees. Given two such trees $T_1$ and $T_2$, both with leaf-set ${1,2,...,n}$, we are interested in the size of the largest subset $S \subseteq {1,2,...,n}$ of leaves…
The Dollo model for reconstructing evolutionary trees from binary characters has been proposed as a generalization of the infinite sites model, also known as the Perfect Phylogeny. In particular, the Dollo model is considered more realistic…
A central limit theorem for binary tree is numerically examined. Two types of central limit theorem for higher-order branches are formulated. A topological structure of a binary tree is expressed by a binary sequence, and the…
Suppose we have n keys, n access probabilities for the keys, and n+1 access probabilities for the gaps between the keys. Let h_min(n) be the minimal height of a binary search tree for n keys. We consider the problem to construct an optimal…
We consider random binary trees that appear as the output of certain standard algorithms for sorting and searching if the input is random. We introduce the subtree size metric on search trees and show that the resulting metric spaces…
Phylogenetic networks generalize phylogenetic trees by allowing the modelization of events of reticulate evolution. Among the different kinds of phylogenetic networks that have been proposed in the literature, the subclass of binary…
We present a new universal source code for distributions of unlabeled binary and ordinal trees that achieves optimal compression to within lower order terms for all tree sources covered by existing universal codes. At the same time, it…
This paper explores profound generalizations of the Fibonacci sequence, delving into random Fibonacci sequences, $k$-Fibonacci words, and their combinatorial properties. We established that the $n$-th root of the absolute value of terms in…
In this paper, we study a maximization problem on real sequences. More precisely, for a given sequence, we are interested in computing the supremum of the sequence and an index for which the associated term is maximal. We propose a general…
We study a new class of polyominoes, called $p$-Fibonacci polyominoes, defined using $p$-Fibonacci words. We enumerate these polyominoes by applying generating functions to capture geometric parameters such as area, semi-perimeter, and the…
We study the distribution of fringe trees in Patricia tries (extending earlier results by Ischebeck (2025)) and compressed binary search trees; both cases are random binary trees that have been compressed by deleting nodes of outdegree 1 so…
An evolutionary tree (phylogenetic tree) is a binary, rooted, unordered tree that models the evolutionary history of currently living species in which leaves are labeled by species. In this paper, we investigate the problem of finding the…
Best match graphs (BMG) are a key intermediate in graph-based orthology detection and contain a large amount of information on the gene tree. We provide a near-cubic algorithm to determine whether a BMG is binary-explainable, i.e., whether…
A recent work shows how we can optimize a tree based mode of operation for a rate 1 hash function. In particular, an algorithm and a theorem are presented for selecting a good tree topology in order to optimize both the running time and the…
In this paper we consider the enumeration of binary trees avoiding non-contiguous binary tree patterns. We begin by computing closed formulas for the number of trees avoiding a single binary tree pattern with 4 or fewer leaves and compare…
A pebbling move on a graph G consists of the removal of two pebbles from one vertex and the placement of one pebble on an adjacent vertex. Rubbling is a version of pebbling where an additional move is allowed, which is also called the…