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Channels are fundamental building blocks from biophysics to soft robotics, often used to transport or separate solutes. As solute particles inevitably transverse between streamlines along the channel by molecular diffusion, the effective…

Soft Condensed Matter · Physics 2020-02-10 Sophie Marbach , Karen Alim

We examine the long-term asymptotic behavior of dissipating solutions to aggregation equations and Patlak-Keller-Segel models with degenerate power-law and linear diffusion. The purpose of this work is to identify when solutions decay to…

Analysis of PDEs · Mathematics 2011-03-29 Jacob Bedrossian

This paper describes how realistic neuromorphic networks can have their connectivity properties fully characterized in analytical fashion. By assuming that all neurons have the same shape and are regularly distributed along the…

Disordered Systems and Neural Networks · Physics 2009-11-10 Luciano da F. Costa

We obtain exact analytical results for lattices of maps with couplings that decay with distance as $r^{-\alpha}$. We analyze the effect of the coupling range on the system dynamics through the Lyapunov spectrum. For lattices whose elements…

Chaotic Dynamics · Physics 2009-11-10 C. Anteneodo , S. E. de S. Pinto , A. M. Batista , R. L. Viana

We study the spatio-temporal spreading of correlations in an ensemble of spins due to dissipation characterized by short- and long-range spatial profiles. We consider systems initially in an uncorrelated state, and find that correlations…

Quantum Gases · Physics 2022-05-25 Kushal Seetharam , Alessio Lerose , Rosario Fazio , Jamir Marino

Information theory provides powerful tools for understanding communication systems. This analysis can be applied to intercellular signal transduction, which is a means of chemical communication among cells and microbes. We discuss how to…

Quantitative Methods · Quantitative Biology 2016-11-15 Andrew W. Eckford , Kenneth A. Loparo , Peter J. Thomas

Molecular communication (MC) is a communication paradigm in which information is conveyed through the controlled release, propagation, and reception of molecules. Many envisioned healthcare applications of MC are expected to operate inside…

Emerging Technologies · Computer Science 2026-04-10 Theofilos Symeonidis , Fardad Vakilipoor , Robert Schober , Nunzio Tuccitto , Maximilian Schäfer

Intercellular signaling has an important role in organism development, but not all communication occurs using the same mechanism. Here, we analyze the energy efficiency of intercellular signaling by two canonical mechanisms: diffusion of…

Quantitative Methods · Quantitative Biology 2022-11-30 Hyunjoong Kim , Yoichiro Mori , Joshua B. Plotkin

Mathematical modeling is now used commonly in the analysis of signaling networks. With advances in high resolution microscopy, the spatial location of different signaling molecules and the spatio-temporal dynamics of signaling microdomains…

Subcellular Processes · Quantitative Biology 2016-07-26 Jasmine Nirody , Padmini Rangamani

The simulation of the metabolism in mammalian cells becomes a severe problem if spatial distributions must be taken into account. Especially the cytoplasm has a very complex geometric structure which cannot be handled by standard…

Numerical Analysis · Mathematics 2010-03-01 Michael Hanke , Marry-Chriz Cabauatan-Villanueva

Recent Brain-Machine Interfaces have shifted towards miniature devices that are constructed from nanoscale components. While these devices can be implanted into the brain, their functionalities can be limited, and will require communication…

Emerging Technologies · Computer Science 2019-11-04 Stefanus Wirdatmadja , Josep Miquel Jornet , Yevgeni Koucheryavy , Sasitharan Balasubramaniam

We give a very simple method for finding the exact analytical solution for the problem of a particle undergoing diffusive motion on a flat potential in the presence of a gaussian sink function. The diffusion process is modelled by using one…

Statistical Mechanics · Physics 2021-08-09 Swati Mudra , Aniruddha Chakraborty

Taylor's model of dispersion simply describes the long-term spread of material along a pipe, channel or river. However, often we need multi-mode models to resolve finer details in space and time. Here we construct zonal models of dispersion…

chao-dyn · Physics 2008-02-03 S. D. Watt , A. J. Roberts

We present a study of the spatial correlation functions of a one-dimensional reaction-diffusion system in both equilibrium and out of equilibrium. For the numerical simulations we have employed the Gillespie algorithm dividing the system in…

Statistical Mechanics · Physics 2014-01-08 Jorge Luis Hita , José María Ortiz de Zárate

Classical Taylor-Aris dispersion theory is extended to describe the transport of suspensions of self-propelled dipolar cells in a tubular flow. General expressions for the mean drift and effective diffusivity are determined exactly in terms…

Soft Condensed Matter · Physics 2010-08-25 M. A. Bees , O. A. Croze

An investigation of the effect of surface diffusion in random deposition model is made by analytical methods and reasoning. For any given site, the extent to which a particle can diffuse is decided by the morphology in the immediate…

Soft Condensed Matter · Physics 2011-12-14 Baisakhi Mal , Subhankar Ray , J. Shamanna

Using extensive Brownian dynamics computer simulations, the long-time self-diffusion coefficient is calculated for Gaussian-core particles as a function of the number density. Both spherical and rod-like particles interacting via Gaussian…

Soft Condensed Matter · Physics 2012-07-17 H. H. Wensink , H. Löwen , M. Rex , C. N. Likos , S. van Teeffelen

This letter develops a one-dimensional (1D) diffusion-based molecular communication system to analyze channel responses between a single transmitter (TX) and two fully-absorbing receivers (RXs). Incorporating molecular degradation in the…

Emerging Technologies · Computer Science 2020-03-24 Xinyu Huang , Yuting Fang , Adam Noel , Nan Yang

We consider a continuous-space and continuous-time diffusion process under resetting with memory. A particle resets to a position chosen from its trajectory in the past according to a memory kernel. Depending on the form of the memory…

Statistical Mechanics · Physics 2017-11-29 Denis Boyer , Martin R. Evans , Satya N. Majumdar

The charging of insulating samples degrades the quality and complicates the interpretation of images in scanning electron microscopy and is important in other applications, such as particle detectors. In this paper we analyze this…

Classical Physics · Physics 2020-06-19 Behrouz Raftari , Neil Budko , Kees Vuik