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This paper discusses temporally continuous and discrete forms of the speed-limited particle-in-cell (SLPIC) method first treated by Werner et al. [Phys. Plasmas 25, 123512 (2018)]. The dispersion relation for a 1D1V electrostatic plasma…

Plasma Physics · Physics 2021-08-31 Thomas G. Jenkins , Gregory R. Werner , John R. Cary

Living cells communicate information about physiological conditions by producing signaling molecules in a specific timed manner. Different conditions can result in the same total amount of a signaling molecule, differing only in the pattern…

Molecular Networks · Quantitative Biology 2018-10-09 Jackson O'Brien , Arvind Murugan

This work demonstrates the application of a birth-death Markov process, inspired by radioactive decay, to capture the dynamics of innovation processes. Leveraging the Bass diffusion model, we derive a Gompertz-like function explaining the…

Statistical Mechanics · Physics 2024-02-14 Guilherme S. Y. Giardini , Carlo R. da Cunha

Like ants, some microorganisms are known to leave trails on surfaces to communicate. We explore how trail-mediated self-interaction could affect the behavior of individual microorganisms when diffusive spreading of the trail is negligible…

Biological Physics · Physics 2016-07-15 W. Till Kranz , Anatolij Gelimson , Kun Zhao , Gerard C. L. Wong , Ramin Golestanian

Shear flow significantly affects the transport of swimming algae in suspension. For example, viscous and gravitational torques bias bottom-heavy cells to swim towards regions of downwelling fluid (gyrotaxis). It is necessary to understand…

Biological Physics · Physics 2015-03-20 O. A. Croze , G. Sardina , M. Ahmed , M. A. Bees , L. Brandt

The lateral diffusion and trapping of protein receptors within the postsynaptic membrane of a neuron plays a key role in determining the strength of synaptic connections and their regulation during learning and memory. In this paper we…

Statistical Mechanics · Physics 2023-07-19 Paul C Bressloff

Depending on their mechanism of self-propulsion, active particles can exhibit a time-dependent, often periodic, propulsion velocity. The precise propulsion velocity profile determines their mean square displacement and their effective…

Soft Condensed Matter · Physics 2024-05-06 Arnau Jurado Romero , Carles Calero , Rossend Rey

We study charge fluctuations of a family of stochastic charged cellular automata away from the deterministic single-file limit and obtain the exact typical charge probability distributions, known to be anomalous, using hydrodynamics. The…

Statistical Mechanics · Physics 2025-06-06 Takato Yoshimura , Žiga Krajnik

We use event driven simulations to analyze glassy dynamics as a function of density and energy dissipation in a two-dimensional bidisperse granular fluid under stationary conditions. Clear signatures of a glass transition are identified,…

Statistical Mechanics · Physics 2011-10-05 Iraj Gholami , Andrea Fiege , Annette Zippelius

We investigate dynamics of activated escape in periodically modulated systems. The trajectories followed in escape form diffusion broadened tubes, which are periodically repeated in time. We show that these tubes can be directly observed…

Statistical Mechanics · Physics 2009-11-11 D. Ryvkine , M. I. Dykman

We propose a minimal mathematical model to explain long-range coordination of dynamics of multiple cells in epithelial spreading, which may be induced, under different conditions, by a chemical signal, or mechanical stress, or both. The…

Biological Physics · Physics 2009-11-30 L. M. Pismen , S. Y. Shvartsman

We consider a dynamical system subjected to weak but adiabatically slow fluctuations of external origin. Based on the ``adiabatic following'' approximation we carry out an expansion in \alpha/|\mu|, where \alpha is the strength of…

Statistical Mechanics · Physics 2009-10-31 S. K. Banik , D. S. Ray

This work reports the results of the theoretical investigation of nonlinear dynamics and spiral wave breakup in a generalized two-variable model of cardiac action potential accounting for thermo-electric coupling and diffusion…

Tissues and Organs · Quantitative Biology 2018-11-07 A. Gizzi , A. Loppini , R. Ruiz-Baier , A. Ippolito , A. Camassa , A. La Camera , E. Emmi , L. Di Perna , V. Garofalo , C. Cherubini , S. Filippi

Intracellular transport of organelles is fundamental to cell function and health. The mounting evidence suggests that this transport is in fact anomalous. However, the reasons for the anomaly is still under debate. We examined experimental…

Subcellular Processes · Quantitative Biology 2018-12-10 Nickolay Korabel , Thomas A. Waigh , Sergei Fedotov , Viki J. Allan

The systematic errors due to the practical implementation of the Contact Dynamics method for simulation of dense granular media are examined. It is shown that, using the usual iterative solver to simulate a chain of rigid particles,…

Soft Condensed Matter · Physics 2009-11-07 Tamas Unger , Lothar Brendel , Dietrich E. Wolf , Janos Kertesz

Cellular sheaves and sheaf Laplacians provide a far-reaching generalization of graphs and graph Laplacians, resulting in a wide array of applications ranging from machine learning to multi-agent control. In the context of multi-agent…

Optimization and Control · Mathematics 2025-10-02 Yichen Zhao , Tyler Hanks , Hans Riess , Samuel Cohen , Matthew Hale , James Fairbanks

A classical approach for the analysis of the longtime behavior of Markov processes is to consider suitable Lyapunov functionals like the variance or more generally $\Phi$-entropies. Via purely analytic arguments it can be shown that these…

Probability · Mathematics 2023-07-26 Benedikt Jahnel , Jonas Köppl

Inter neuron communication happens through the exchange of neurotransmitters at the synapse by a process known as exocytosis. This makes exocytosis a fundamental process of information exchange in the body. The exocytosis process has a…

Biological Physics · Physics 2023-02-01 Sundeep Kapila , Pradeep R. Nair

Energy dissipation is highly intermittent in turbulent plasmas, being localized in coherent structures such as current sheets. The statistical analysis of spatial dissipative structures is an effective approach to studying turbulence. In…

High Energy Astrophysical Phenomena · Physics 2015-09-16 Vladimir Zhdankin , Dmitri A. Uzdensky , Stanislav Boldyrev

Diffusion models are important in tissue engineering as they enable an understanding of molecular delivery to cells in tissue constructs. As three-dimensional (3D) tissue constructs become larger, more intricate, and more clinically…

Tissues and Organs · Quantitative Biology 2015-12-22 Richard J. McMurtrey
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