English
Related papers

Related papers: Closed-loop targeted optogenetic stimulation of C.…

200 papers

Optogenetics is a rapidly growing field of biotechnology, potentially allowing a deeper understanding and control of complex biological networks. The major challenge is the multiplexed control of several optogenetic components in the…

Quantitative Methods · Quantitative Biology 2018-11-14 Zachary Quine , Alexei Goun , Herschel Rabitz

Objective: Optogenetic manipulations of excitable cells enable activating or silencing specific types of neurons. By expressing two types of exogenous proteins, a single neuron can be depolarized using light of one wavelength and…

Systems and Control · Electrical Eng. & Systems 2022-11-28 Ori Noked , Amir Levi , Shirly Someck , Ortal Amber-Vitos , Eran Stark

The ability to acquire large-scale recordings of neuronal activity in awake and unrestrained animals poses a major challenge for studying neural coding of animal behavior. We present a new instrument capable of recording intracellular…

Neurons and Cognition · Quantitative Biology 2015-12-31 Jeffrey P. Nguyen , Frederick B. Shipley , Ashley N. Linder , George S. Plummer , Joshua W. Shaevitz , Andrew M. Leifer

Cyborg in the brain-machine interface field has attracted more attention in recent years. To control a creature via a machine called cyborg method, three stages are considerable: stimulation of neurons, neural response, and the behavioral…

Biological Physics · Physics 2019-05-01 Mohammad Jamali , Yousef Jamali , Mehdi Golshani

Optogenetics is a revolutionary new field of biotechnology, achieving optical control over biological functions in living cells by genetically inserting light sensitive proteins into cellular signaling pathways. Applications of optogenetic…

Quantitative Methods · Quantitative Biology 2018-10-29 Zachary Quine , Alexei Goun , Karl Gerhardt , Jeffrey Tabor , Herschel Rabitz

The nematode Caenorhabditis elegans, with information on neural connectivity, three-dimensional position and cell linage provides a unique system for understanding the development of neural networks. Although C. elegans has been widely…

Biological Physics · Physics 2011-01-17 Sreedevi Varier , Marcus Kaiser

The primary motor cortex appears to be in the center of transcranial magnetic stimulation (TMS). It is one of few locations that provide directly observable responses, and its physiology serves as model or reference for almost all other TMS…

Neurons and Cognition · Quantitative Biology 2025-07-08 Maryam Farahmandrad , Stefan Goetz

In studies of the visual system as well as in computer vision, the focus is often on contrast edges. However, the primate visual system contains a large number of cells that are insensitive to spatial contrast and, instead, respond to…

Neurons and Cognition · Quantitative Biology 2021-03-30 Michael Schmuker , Rüdiger Kupper , Ad Aertsen , Thomas Wachtler , Marc-Oliver Gewaltig

C. elegans locomotion is composed of switches between forward and reversal states punctuated by turns. This locomotory capability is necessary for the nematode to move towards attractive stimuli, escape noxious chemicals, and explore its…

Neurons and Cognition · Quantitative Biology 2025-01-03 Megan Morrison , Lai-Sang Young

Objective: Closed-loop deep brain stimulation (DBS) may improve current clinical DBS treatment for neurological movement disorders, but control algorithms may perform differently across patients. New metrics are needed for comparing and…

Neurons and Cognition · Quantitative Biology 2016-05-31 Jeffrey Herron , Anca Velisar , Mahsa Malekmohammadi , Helen Bronte-Stewart , Howard Jay Chizeck

C. elegans is the only animal for which a detailed neural connectivity diagram has been constructed. However, synaptic polarities in this diagram, and thus, circuit functions are largely unknown. Here, we deciphered the likely polarities of…

Neurons and Cognition · Quantitative Biology 2014-03-21 Franciszek Rakowski , Jagan Srinivasan , Paul W. Sternberg , Jan Karbowski

The application of closed-loop approaches in systems neuroscience and therapeutic stimulation holds great promise for revolutionizing our understanding of the brain and for developing novel neuromodulation therapies to restore lost…

Signal Processing · Electrical Eng. & Systems 2021-10-12 Bingzhao Zhu , Uisub Shin , Mahsa Shoaran

It has been hypothesized that Gamma cortical oscillations play important roles in numerous cognitive processes and may involve psychiatric conditions including anxiety, schizophrenia, and autism. Gamma rhythms are commonly observed in many…

Neurons and Cognition · Quantitative Biology 2021-03-11 Fereshteh Arab , Sareh Rostami , Mohammad Dehghani-Habibabadi , Vahid Salari , Mir-Shahram Safari

We consider a wide family of optical coherent feedback loops acting on an optomechanical system operating in the linearized regime. We assess the efficacy of such loops in improving key operations, such as cooling, steady-state squeezing…

Quantum Physics · Physics 2021-02-17 Alfred Harwood , Matteo Brunelli , Alessio Serafini

Background: Transcranial magnetic stimulation (TMS) is a powerful tool to investigate neurophysiology of the human brain and treat brain disorders. Traditionally, therapeutic TMS has been applied in a one-size-fits-all approach,…

In this paper we present a Spiking Neural Network (SNN) for autonomous navigation, inspired by the chemotaxis network of the worm Caenorhabditis elegans. In particular, we focus on the problem of contour tracking, wherein the bot must reach…

Neurons and Cognition · Quantitative Biology 2020-08-04 Shashwat Shukla , Rohan Pathak , Vivek Saraswat , Udayan Ganguly

The brain stimulation and its widespread use is one of the most important subjects in studies of neurophysiology. In brain electrical stimulation methods, following the surgery and electrode implantation, electrodes send electrical impulses…

Neurons and Cognition · Quantitative Biology 2019-01-11 Amirmasoud Ahmadi , Sepideh Farakhor Seghinsara , Mohammad Reza Daliri , Vahid Shalchyan

The majority of inherited retinal degenerations are due to photoreceptor cell death. In many cases ganglion cells are spared making it possible to stimulate them to restore visual function. Several studies (Bi et al., 2006; Lin et al.,…

Significance: Imaging neural activity in myelinated tissue using optical coherence tomography (OCT) creates new possibilities for functional imaging in the peripheral and central nervous systems. Aim: To investigate changes in OCT images in…

Neurons and Cognition · Quantitative Biology 2021-07-07 James Hope , Matthew Goodwin , Frederique Vanholsbeeck

The nematode Caenorhabditis elegans is a well-known model organism used to investigate fundamental questions in biology. Motility assays of this small roundworm are designed to study the relationships between genes and behavior. Commonly,…

Computer Vision and Pattern Recognition · Computer Science 2015-05-19 Raphael Sznitman , Manaswi Gupta , Gregory D. Hager , Paulo E. Arratia , Josue Sznitman