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GeneVis is a web-based tool to visualize complementary data sets of different disciplines within the field of genetics. It overlays gene-cluster information, gene-interaction data and gene-disease association data by means of web-based…

Graphics · Computer Science 2018-05-08 Casper van Leeuwen

Multi-omics data offer unprecedented insights into complex biological systems, yet their high dimensionality, sparsity, and intricate interactions pose significant analytical challenges. Network-based approaches have advanced multi-omics…

Protein-protein interaction networks (PPIN) enable the study of cellular processes in organisms. Visualizing PPINs in extended reality (XR), including virtual reality (VR) and mixed reality (MR), is crucial for exploring subnetworks,…

Multimedia · Computer Science 2024-02-07 Busra Senderin , Nurcan Tuncbag , Elif Surer

Researchers have used machine learning approaches to identify motion sickness in VR experience. These approaches demand an accurately-labeled, real-world, and diverse dataset for high accuracy and generalizability. As a starting point to…

Artificial Intelligence · Computer Science 2023-06-07 Elliott Wen , Chitralekha Gupta , Prasanth Sasikumar , Mark Billinghurst , James Wilmott , Emily Skow , Arindam Dey , Suranga Nanayakkara

Data visualization is a fundamental tool in genomics research, enabling the exploration, interpretation, and communication of complex genomic features. While machine learning models show promise for transforming data into insightful…

Geometric deep learning has been revolutionizing the molecular modeling field. Despite the state-of-the-art neural network models are approaching ab initio accuracy for molecular property prediction, their applications, such as drug…

Chemical Physics · Physics 2023-08-17 Yusong Wang , Shaoning Li , Xinheng He , Mingyu Li , Zun Wang , Nanning Zheng , Bin Shao , Tie-Yan Liu , Tong Wang

RNAnet provides a bridge between two widely used Human gene databases. Ensembl describes DNA sequences and transcripts but not experimental gene expression. Whilst NCBI's GEO contains actual expression levels from Human samples. RNAnet…

Molecular Networks · Quantitative Biology 2010-01-26 W. B. Langdon , Olivia Sanchez Graillet , A. P. Harrison

With the rapid development of Quantum Machine Learning, quantum neural networks (QNN) have experienced great advancement in the past few years, harnessing the advantages of quantum computing to significantly speed up classical machine…

Human-Computer Interaction · Computer Science 2023-12-27 Shaolun Ruan , Zhiding Liang , Qiang Guan , Paul Griffin , Xiaolin Wen , Yanna Lin , Yong Wang

Volume data is found in many important scientific and engineering applications. Rendering this data for visualization at high quality and interactive rates for demanding applications such as virtual reality is still not easily achievable…

Graphics · Computer Science 2022-09-22 David Bauer , Qi Wu , Kwan-Liu Ma

As DenseNet conserves intermediate features with diverse receptive fields by aggregating them with dense connection, it shows good performance on the object detection task. Although feature reuse enables DenseNet to produce strong features…

Computer Vision and Pattern Recognition · Computer Science 2019-04-23 Youngwan Lee , Joong-won Hwang , Sangrok Lee , Yuseok Bae , Jongyoul Park

Visual Entity Linking (VEL) is a task to link regions of images with their corresponding entities in Knowledge Bases (KBs), which is beneficial for many computer vision tasks such as image retrieval, image caption, and visual question…

Computer Vision and Pattern Recognition · Computer Science 2022-11-10 Wenxiang Sun , Yixing Fan , Jiafeng Guo , Ruqing Zhang , Xueqi Cheng

Many mission-critical systems are based on GPU for inference. It requires not only high recognition accuracy but also low latency in responding time. Although many studies are devoted to optimizing the structure of deep models for efficient…

Computer Vision and Pattern Recognition · Computer Science 2020-08-13 Ming Lin , Hesen Chen , Xiuyu Sun , Qi Qian , Hao Li , Rong Jin

Recent years have seen the advent of molecular simulation datasets that are orders of magnitude larger and more diverse. These new datasets differ substantially in four aspects of complexity: 1. Chemical diversity (number of different…

Summary: The vast generation of genetic data poses a significant challenge in efficiently uncovering valuable knowledge. Introducing GENEVIC, an AI-driven chat framework that tackles this challenge by bridging the gap between genetic data…

Quantitative Methods · Quantitative Biology 2024-04-09 Anindita Nath , Savannah Mwesigwa , Yulin Dai , Xiaoqian Jiang , Zhongming Zhao

Biological data including gene expression data are generally high-dimensional and require efficient, generalizable, and scalable machine-learning methods to discover their complex nonlinear patterns. The recent advances in machine learning…

Machine Learning · Computer Science 2020-12-21 Dinesh Singh , Héctor Climente-González , Mathis Petrovich , Eiryo Kawakami , Makoto Yamada

Motivation: Real-world data often contain measurements with both continuous and discrete values. Despite the availability of many libraries, data sets with mixed data types require intensive pre-processing steps, and it remains a challenge…

Machine Learning · Computer Science 2020-05-12 Erdogan Taskesen

ImageNet-1K linear-probe transfer accuracy remains the default proxy for visual representation quality, yet it no longer predicts performance on scientific imagery. Across 46 modern vision model checkpoints, ImageNet top-1 accuracy explains…

Computer Vision and Pattern Recognition · Computer Science 2025-11-21 Samuel Stevens

Facial expressions of emotion are a major channel in our daily communications, and it has been subject of intense research in recent years. To automatically infer facial expressions, convolutional neural network based approaches has become…

Computer Vision and Pattern Recognition · Computer Science 2020-08-14 Bita Houshmand , Naimul Khan

In this paper, we present an approach based on convolutional neural networks (CNNs) for facial expression recognition in a difficult setting with severe occlusions. More specifically, our task is to recognize the facial expression of a…

Computer Vision and Pattern Recognition · Computer Science 2019-11-13 Mariana-Iuliana Georgescu , Radu Tudor Ionescu

Retrieving gene functional networks from knowledge databases presents a challenge due to the mismatch between disease networks and subtype-specific variations. Current solutions, including statistical and deep learning methods, often fail…

Machine Learning · Computer Science 2025-02-25 Ziwei Yang , Zheng Chen , Xin Liu , Rikuto Kotoge , Peng Chen , Yasuko Matsubara , Yasushi Sakurai , Jimeng Sun
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