Related papers: Absent Subsequences in Words
String geometry theory is a candidate of the non-perturvative formulation of string theory. In this theory, strings constitute not only particles but also the space-time. In this review, we identify perturbative vacua, and derive the…
Given a sequence composed of a limit number of characters, we try to "read" it as a "text". This involves to segment the sequence into "words". The difficulty is to distinguish good segmentation from enormous number of random ones.Aiming at…
A reduced word of a permutation $w$ is a minimal length expression of $w$ as a product of simple transpositions. We examine the computational complexity, formulas and (randomized) algorithms for their enumeration. In particular, we prove…
In the Shortest-Superstring problem, we are given a set of strings S and want to find a string that contains all strings in S as substrings and has minimum length. This is a classical problem in approximation and the best known…
We show that Closest Substring, one of the most important problems in the field of biological sequence analysis, is W[1]-hard when parameterized by the number k of input strings (and remains so, even over a binary alphabet). This problem is…
The classic string indexing problem is to preprocess a string $S$ into a compact data structure that supports efficient subsequent pattern matching queries, that is, given a pattern string $P$, report all occurrences of $P$ within $S$. In…
A finite word $w$ is called \textit{closed} if it has length at most 1 or it contains a proper factor that occurs both as a prefix and as a suffix but does not have internal occurrences in $w$. An infinite word $u$ is called…
Let w be a factor of Fibonacci sequence F=x_1x_2..., then it appears in the sequence infinitely many times. Let w_p be the p-th appearance of w and v_{w,p} be the gap between w_p and w_{p+1}. In this paper, we discuss the structure of the…
Consider a finite set of sources, each producing i.i.d. observations that follow a unique probability distribution on a finite alphabet. We study the problem of matching a finite set of observed sequences to the set of sources under the…
The discrepancy of a binary string is the maximum (absolute) difference between the number of ones and the number of zeroes over all possible substrings of the given binary string. In this note we determine the minimal discrepancy that a…
We consider the general problem of the Longest Common Subsequence (LCS) on weighted sequences. Weighted sequences are an extension of classical strings, where in each position every letter of the alphabet may occur with some probability.…
Let $f_W(n)$ be the number of different factors of length $n$ appearing in $W$. A classical result of Morse and Hedlund, stated in 1938, asserts that an infinite word $W$ is ultimately periodic if and only if $f_W(n)\leq n$ for some $n\in…
The palindromic length $\text{PL}(v)$ of a finite word $v$ is the minimal number of palindromes whose concatenation is equal to $v$. In 2013, Frid, Puzynina, and Zamboni conjectured that: If $w$ is an infinite word and $k$ is an integer…
For $\alpha\geq 1$, an $\alpha$-gapped repeat in a word $w$ is a factor $uvu$ of $w$ such that $|uv|\leq \alpha |u|$; the two factors $u$ in such a repeat are called arms, while the factor $v$ is called gap. Such a repeat is called maximal…
Let $A\subseteq \mathbb Z_n$ be a subset. A sequence $S=(x_1,\ldots,x_k)$ in $\mathbb Z_n$ is said to be an $A$-weighted zero-sum sequence if there exist $a_1,\ldots,a_k\in A$ such that $a_1x_1+\cdots+a_kx_k=0$. By a square, we shall mean a…
The classic string indexing problem is to preprocess a string S into a compact data structure that supports efficient pattern matching queries. Typical queries include existential queries (decide if the pattern occurs in S), reporting…
Submodularity is a fundamental phenomenon in combinatorial optimization. Submodular functions occur in a variety of combinatorial settings such as coverage problems, cut problems, welfare maximization, and many more. Therefore, a lot of…
We revisit the problem of finding shortest unique substring (SUS) proposed recently by [6]. We propose an optimal $O(n)$ time and space algorithm that can find an SUS for every location of a string of size $n$. Our algorithm significantly…
We consider the approximate pattern matching problem under edit distance. In this problem we are given a pattern $P$ of length $w$ and a text $T$ of length $n$ over some alphabet $\Sigma$, and a positive integer $k$. The goal is to find all…
We consider string matching with variable length gaps. Given a string $T$ and a pattern $P$ consisting of strings separated by variable length gaps (arbitrary strings of length in a specified range), the problem is to find all ending…