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Persistent homology barcodes and diagrams are a cornerstone of topological data analysis that capture the "shape" of a wide range of complex data structures, such as point clouds, networks, and functions. However, their use in statistical…

Algebraic Topology · Mathematics 2024-09-24 Qiquan Wang , Inés García-Redondo , Pierre Faugère , Gregory Henselman-Petrusek , Anthea Monod

The Learnable Tree Filter presents a remarkable approach to model structure-preserving relations for semantic segmentation. Nevertheless, the intrinsic geometric constraint forces it to focus on the regions with close spatial distance,…

Computer Vision and Pattern Recognition · Computer Science 2020-12-08 Lin Song , Yanwei Li , Zhengkai Jiang , Zeming Li , Xiangyu Zhang , Hongbin Sun , Jian Sun , Nanning Zheng

Word embeddings represent language vocabularies as clouds of $d$-dimensional points. We investigate how information is conveyed by the general shape of these clouds, instead of representing the semantic meaning of each token. Specifically,…

Computation and Language · Computer Science 2025-01-15 Ondřej Draganov , Steven Skiena

We define edit distance for hierarchically structured data compatible with the hierarchical multi-instance learning paradigm. Example of such data is dataset represented in JSON format where inner Array objects are interpreted as unordered…

Databases · Computer Science 2022-08-02 Břetislav Šopík , Tomáš Strenáčik

We consider mechanics of composite materials in which thin inclusions are modeled by lower-dimensional manifolds. By successively applying the dimensional reduction to junctions and intersections within the material, a geometry of…

Numerical Analysis · Mathematics 2019-03-06 Wietse M. Boon , Jan M. Nordbotten

Topological Data Analysis (TDA) is a recent and growing branch of statistics devoted to the study of the shape of the data. In this work we investigate the predictive power of TDA in the context of supervised learning. Since topological…

Machine Learning · Statistics 2017-09-22 Tullia Padellini , Pierpaolo Brutti

Surface roughness plays an important role in analyzing engineering surfaces. It quantifies the surface topography and can be used to determine whether the resulting surface finish is acceptable or not. Nevertheless, while several existing…

Signal Processing · Electrical Eng. & Systems 2021-10-20 Melih C. Yesilli , Firas A. Khasawneh

Topological Data Analysis (TDA) provides a toolkit for the study of the shape of high dimensional and complex data. While operating on a space of persistence diagrams is cumbersome, persistence norms provide a simple real value measure of…

Methodology · Statistics 2023-09-26 Pawel Dlotko , Simon Rudkin

In this paper, we study merge trees induced by a discrete Morse function on a tree. Given a discrete Morse function, we provide a method to constructing an induced merge tree and define a new notion of equivalence of discrete Morse…

Algebraic Topology · Mathematics 2020-07-21 Benjamin Johnson , Nicholas A. Scoville

We introduce a new notion of equivalence of discrete Morse functions on graphs called persistence equivalence. Two functions are considered persistence equivalent if and only if they induce the same persistence diagram. We compare this…

Algebraic Topology · Mathematics 2018-07-25 Yuqing Liu , Nicholas A. Scoville

Model merging combines knowledge from separately fine-tuned models, yet the factors driving its success remain poorly understood. While recent work treats mergeability as an intrinsic property of the models, we show with an…

Machine Learning · Computer Science 2026-05-27 Luca Zhou , Bo Zhao , Rose Yu , Emanuele Rodolà

This paper brings together three distinct theories with the goal of quantifying shape textures with complex morphologies. Distance fields are central objects in shape representation, while topological data analysis uses algebraic topology…

Algebraic Topology · Mathematics 2023-07-04 Anna Song , Ka Man Yim , Anthea Monod

Performance analysis has always been an afterthought during the application development process, focusing on application correctness first. The learning curve of the existing static and dynamic analysis tools are steep, which requires…

Machine Learning · Computer Science 2021-04-23 Nathan Pinnow , Tarek Ramadan , Tanzima Z. Islam , Chase Phelps , Jayaraman J. Thiagarajan

Based on solid theoretical foundations, we present strong evidences that a number of real-life networks, taken from different domains like Internet measurements, biological data, web graphs, social and collaboration networks, exhibit…

Social and Information Networks · Computer Science 2014-02-24 Muad Abu-Ata , Feodor F. Dragan

Graph Edit Distance (GED) is defined as the minimum cost transformation of one graph into another and is a widely adopted metric for measuring the dissimilarity between graphs. The major problem of GED is that its computation is NP-hard,…

Machine Learning · Computer Science 2026-02-24 Francesco Leonardi , Markus Orsi , Jean-Louis Reymond , Kaspar Riesen

Improvements in experimental and computational technologies have led to significant increases in data available for analysis. Topological data analysis (TDA) is an emerging area of mathematical research that can identify structures in these…

Quantitative Methods · Quantitative Biology 2022-07-25 Maria-Veronica Ciocanel , Riley Juenemann , Adriana T. Dawes , Scott A. McKinley

Rotation distances measure the differences in structure between rooted ordered binary trees. The one-dimensional skeleta of associahedra are rotation graphs, where two vertices representing trees are connected by an edge if they differ by a…

Data Structures and Algorithms · Computer Science 2020-06-29 Sean Cleary , Haris Nadeem

Model merging combines fine-tuned checkpoints into a single multi-task model without retraining. Existing methods - such as task arithmetic, model soups, TIES, and DARE - are computationally efficient and empirically successful, but rely on…

Machine Learning · Computer Science 2026-05-29 Bethan Evans , Benjamin Etheridge , Stephen Roberts , Jared Tanner

Many topological data analysis (TDA) pipelines compute large collections of persistence diagrams, yet vectorizations and kernel methods discard the rank-induced implication relations among persistence intervals that are essential for…

Computational Geometry · Computer Science 2026-05-12 Charles Fanning , Mehmet Aktas

Data analysis and data mining are concerned with unsupervised pattern finding and structure determination in data sets. The data sets themselves are explicitly linked as a form of representation to an observational or otherwise empirical…

Machine Learning · Statistics 2011-01-11 Fionn Murtagh