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A model of interacting motile chaotic elements is proposed. The chaotic elements are distributed in space and interact with each other through interactions depending on their positions and their internal states. As the value of a governing…
For classical dynamical systems, the polynomial entropy serves as a refined invariant of the topological entropy. In the setting of categorical dynamical systems, that is, triangulated categories endowed with an endofunctor, we develop the…
An open stochastic system \`a la Jan Willems is a system affected by two qualitatively different kinds of uncertainty: one is probabilistic fluctuation, and the other one is nondeterminism caused by a fundamental lack of information. We…
We show that scaling arguments are very useful to analyze the dynamics of periodically modulated noisy systems. Information about the behavior of the relevant quantities, such as the signal-to-noise ratio, upon variations of the noise…
We consider stochastic differential equations, obtained by adding weak Gaussian white noise to ordinary differential equations admitting $N$ asymptotically stable periodic orbits. We construct a discrete-time, continuous-space Markov chain,…
Fluctuations in biochemical networks, e.g., in a living cell, have a complex origin that precludes a description of such systems in terms of bipartite or multipartite processes, as is usually done in the framework of stochastic and/or…
"Clarithmetic" is a generic name for formal number theories similar to Peano arithmetic, but based on computability logic (see http://www.cis.upenn.edu/~giorgi/cl.html) instead of the more traditional classical or intuitionistic logics.…
In this review article, we discuss connections between the physics of disordered systems, phase transitions in inference problems, and computational hardness. We introduce two models representing the behavior of glassy systems, the spiked…
Polymer dynamics is analyzed through the lens of linear dimensionality reduction methods, in particular principal (PCA) and time-lagged independent component analysis (tICA). For a polymer undergoing ideal Rouse dynamics, the slow modes…
Designing complex engineered systems requires managing tightly coupled trade-offs between subsystem capabilities and resource requirements. Monotone co-design provides a compositional language for such problems, but its generality does not…
This paper considers the problem of minimal control inputs to affect the system states such that the resulting system is structurally controllable. This problem and the dual problem of minimal observability are claimed to have no…
This paper is an attempt to incorporate the idea of spiking neural P systems as an early seed into the area of Operating System Design, regarding their capability to solve some classical computer science problems. It is reflecting the power…
Aggregation processes in systems of planar macromolecules and colloids drive a broad range of phenomena in natural systems and soft materials. Depending on chemical architecture, intermolecular interactions in these systems may favor…
We revisit the canonical continuous-time and discrete-time matrix algebraic and matrix differential equations that play a central role in Lyapunov based stability arguments. The goal is to generalize and extend these types of equations and…
In the present paper, an essential generalization of the symbolic dynamics is considered. We apply the notions of abstract self-similar sets and the similarity map for a chaos introduction, which orbits are expanded among infinitely many…
We provide an implicit characterization of polynomial time computation in terms of ordinary differential equations: we characterize the class $\operatorname{PTIME}$ of languages computable in polynomial time in terms of differential…
Active classification, i.e., the sequential decision-making process aimed at data acquisition for classification purposes, arises naturally in many applications, including medical diagnosis, intrusion detection, and object tracking. In this…
We classify the global dynamics of a family of Kolmogorov systems depending on three parameters which has ecological meaning as it modelizes a predator-prey system. We obtain all their topologically distinct global phase portraits in the…
The Kramers' theory of activated processes is generalized for nonequilibrium open one-dimensional systems. We consider both the internal noise due to thermal bath and the external noise which are stationary, Gaussian and are characterized…
This paper studies trace-based equivalences for systems combining nondeterministic and probabilistic choices. We show how trace semantics for such processes can be recovered by instantiating a coalgebraic construction known as the…