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Infrastructure shapes societies and scientific discovery. Traditional scientific infrastructure, often static and fragmented, leads to issues like data silos, lack of interoperability and reproducibility, and unsustainable short-lived…

Neurons and Cognition · Quantitative Biology 2025-08-15 Satrajit S. Ghosh

Continuous and reliable access to curated biological data repositories is indispensable for accelerating rigorous scientific inquiry and fostering reproducible research. Centralized repositories, though widely used, are vulnerable to single…

Cloud computing provides scientists a platform that can deploy computation and data intensive applications without infrastructure investment. With excessive cloud resources and a decision support system, large generated data sets can be…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-01-27 Dong Yuan , Lizhen Cui , Xiao Liu , Erjiang Fu , Yun Yang

Scientific data management is at a critical juncture, driven by exponential data growth, increasing cross-domain dependencies, and a severe reproducibility crisis in modern research. Traditional centralized data management approaches are…

Databases · Computer Science 2025-04-30 Sebastian Beyvers , Jannis Hochmuth , Lukas Brehm , Maria Hansen , Alexander Goesmann , Frank Förster

Progress in science is deeply bound to the effective use of high-performance computing infrastructures and to the efficient extraction of knowledge from vast amounts of data. Such data comes from different sources that follow a cycle…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-06-15 Rosa M Badia , Jorge Ejarque , Francesc Lordan , Daniele Lezzi , Javier Conejero , Javier Álvarez Cid-Fuentes , Yolanda Becerra , Anna Queralt

This chapter addresses the forth paradigm of materials research -- big-data driven materials science. Its concepts and state-of-the-art are described, and its challenges and chances are discussed. For furthering the field, Open Data and an…

Materials Science · Physics 2019-04-12 Claudia Draxl , Matthias Scheffler

The sharing and citation of research data is becoming increasingly recognized as an essential building block in scientific research across various fields and disciplines. Sharing research data allows other researchers to reproduce results,…

Digital Libraries · Computer Science 2023-09-22 Tim Conrad , Eloi Ferrer , Daniel Mietchen , Larissa Pusch , Johannes Stegmuller , Moritz Schubotz

Large systems biology projects can encompass several workgroups often located in different countries. An overview about existing data standards in systems biology and the management, storage, exchange and integration of the generated data…

Databases · Computer Science 2009-12-15 Gerhard Mayer

The importance of datasharing is of increasing concern to funding bodies and institutions. With some prescience, the radiobiology community has established data sharing infrastructures over the last two decades, including STORE; however,…

Computers and Society · Computer Science 2018-05-16 Balázs G. Madas , Paul N. Schofield

This is a thought piece on data-intensive science requirements for databases and science centers. It argues that peta-scale datasets will be housed by science centers that provide substantial storage and processing for scientists who access…

Databases · Computer Science 2007-05-23 Jim Gray , David T. Liu , Maria Nieto-Santisteban , Alexander S. Szalay , David DeWitt , Gerd Heber

Modern research in the life sciences is unthinkable without computational methods for extracting, quantifying and visualizing information derived from biological microscopy imaging data. In the past decade, we observed a dramatic increase…

With the shifting focus of organizations and governments towards digitization of academic and technical documents, there has been an increasing need to use this reserve of scholarly documents for developing applications that can facilitate…

Digital Libraries · Computer Science 2016-06-07 Samiya Khan , Kashish A. Shakil , Mansaf Alam

The Hybrid Technology Hub and many other research centers work in cross-functional teams whose workflow is not necessarily linear and where in many cases technology advances are done through parallel work. The lack of proper tools and…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-02-18 Pavel Vazquez , Kayoko Shoji , Steffen Novik , Stefan Krauss , Simon Rayner

In the past few decades, the life sciences have experienced an unprecedented accumulation of data, ranging from genomic sequences and proteomic profiles to heavy-content imaging, clinical assays, and commercial biological products for…

Databases · Computer Science 2025-09-22 Rosalia Moreddu

The sophisticated tools and techniques employed by Nature for purposeful storage of information stand in stark contrast to the primitive and relatively inefficient means used by man. We describe some impressive features of biological data…

Other Quantitative Biology · Quantitative Biology 2014-09-01 Masud Mansuripur

The advent of experimental science facilities-instruments and observatories, such as the Large Hadron Collider, the Laser Interferometer Gravitational Wave Observatory, and the upcoming Large Synoptic Survey Telescope-has brought about…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-02-12 E. A. Huerta , Roland Haas , Shantenu Jha , Mark Neubauer , Daniel S. Katz

We should be in a golden age of scientific discovery, given that we have more data and more compute power available than ever before, plus a new generation of algorithms that can learn effectively from data. But paradoxically, in many…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-06-26 Niall H. Robinson , Joe Hamman , Ryan Abernathey

Storing data is easy, but finding and using data is not. It is desirable that the data is stored in a structured format, which can be preserved and retrieved in future. Creating Metadata for the data is one way of creating structured data…

Information Theory · Computer Science 2011-01-04 Ranjeet Devarakonda , Giri Palanisamy , Jim Green

Scientific communities naturally tend to organize around data ecosystems created by the combination of their observational devices, their data repositories, and the workflows essential to carry their research from observation to discovery.…

Networking and Internet Architecture · Computer Science 2021-06-30 Mark Asch , François Bodin , Micah Beck , Terry Moore , Michela Taufer , Martin Swany , Jean-Pierre Vilotte
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