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Birds are important indicators for monitoring both biodiversity and habitat health; they also play a crucial role in ecosystem management. Decline in bird populations can result in reduced eco-system services, including seed dispersal,…

Computer Vision and Pattern Recognition · Computer Science 2023-05-04 Carl Chalmers , Paul Fergus , Serge Wich , Steven N Longmore , Naomi Davies Walsh , Philip Stephens , Chris Sutherland , Naomi Matthews , Jens Mudde , Amira Nuseibeh

Photo-identification (photo-id) is one of the main non-invasive capture-recapture methods utilised by marine researchers for monitoring cetacean (dolphin, whale, and porpoise) populations. This method has historically been performed…

Computer Vision and Pattern Recognition · Computer Science 2022-12-08 Cameron Trotter , Nick Wright , A. Stephen McGough , Matt Sharpe , Barbara Cheney , Mònica Arso Civil , Reny Tyson Moore , Jason Allen , Per Berggren

Since coral reef ecosystems face threats from human activities and climate change, coral conservation programs are implemented worldwide. Monitoring coral health provides references for guiding conservation activities. However, current…

Computer Vision and Pattern Recognition · Computer Science 2025-12-18 Xinlei Shao , Hongruixuan Chen , Kirsty Magson , Jiaqi Wang , Jian Song , Jundong Chen , Jun Sasaki

Monitoring wildlife through camera traps produces a massive amount of images, whose a significant portion does not contain animals, being later discarded. Embedding deep learning models to identify animals and filter these images directly…

Computer Vision and Pattern Recognition · Computer Science 2021-04-20 Fagner Cunha , Eulanda M. dos Santos , Raimundo Barreto , Juan G. Colonna

With the rapid advancement of artificial intelligence technology, AI-enabled image recognition has emerged as a potent tool for addressing challenges in traditional environmental monitoring. This study focuses on the detection of floating…

Computer Vision and Pattern Recognition · Computer Science 2024-04-22 Jingyu Zhang , Ao Xiang , Yu Cheng , Qin Yang , Liyang Wang

Humans are able to categorize images very efficiently, in particular to detect the presence of an animal very quickly. Recently, deep learning algorithms based on convolutional neural networks (CNNs) have achieved higher than human accuracy…

Neurons and Cognition · Quantitative Biology 2023-06-01 Jean-Nicolas Jérémie , Laurent U Perrinet

Zebrafish embryos are a valuable model for drug discovery due to their optical transparency and genetic similarity to humans. However, current evaluations rely on manual inspection, which is costly and labor-intensive. While machine…

Computer Vision and Pattern Recognition · Computer Science 2026-05-12 Sarath Sivaprasad , Hui-Po Wang , Anna-Lisa Jäckel , Jonas Baumann , Carole Baumann , Jennifer Herrmann , Mario Fritz

Underwater surveys provide long-term data for informing management strategies, monitoring coral reef health, and estimating blue carbon stocks. Advances in broad-scale survey methods, such as robotic underwater vehicles, have increased the…

Computer Vision and Pattern Recognition · Computer Science 2024-11-19 Scarlett Raine , Frederic Maire , Niko Suenderhauf , Tobias Fischer

Marine ecosystems are vital for the planet's health, but human activities such as climate change, pollution, and overfishing pose a constant threat to marine species. Accurate classification and monitoring of these species can aid in…

Computer Vision and Pattern Recognition · Computer Science 2023-09-19 Kohav Dey , Krishna Bajaj , K S Ramalakshmi , Samuel Thomas , Sriram Radhakrishna

Automating the annotation of benthic imagery (i.e., images of the seafloor and its associated organisms, habitats, and geological features) is critical for monitoring rapidly changing ocean ecosystems. Deep learning approaches have…

Quantitative Methods · Quantitative Biology 2025-04-25 H. Martin Gillis , Isaac Xu , Benjamin Misiuk , Craig J. Brown , Thomas Trappenberg

Deep learning provides the opportunity to improve upon conflicting reports considering the relationship between the Amazon river's fish and dolphin abundance and reduced canopy cover as a result of deforestation. Current methods of fish and…

Computer Vision and Pattern Recognition · Computer Science 2020-07-28 Stefan Schneider , Alex Zhuang

Under the impact of global climate changes and human activities, harmful algae blooms in surface waters have become a growing concern due to negative impacts on water related industries. Therefore, reliable and cost effective methods of…

Computer Vision and Pattern Recognition · Computer Science 2018-10-26 Jason L. Deglint , Chao Jin , Alexander Wong

Biofouling is the accumulation of organisms on surfaces immersed in water. It is of particular concern to the international shipping industry because it increases fuel costs and presents a biosecurity risk by providing a pathway for…

Computer Vision and Pattern Recognition · Computer Science 2021-02-22 Nathaniel J. Bloomfield , Susan Wei , Bartholomew Woodham , Peter Wilkinson , Andrew Robinson

Insects are a crucial part of our ecosystem. Sadly, in the past few decades, their numbers have worryingly decreased. In an attempt to gain a better understanding of this process and monitor the insects populations, Deep Learning may offer…

Artificial Intelligence · Computer Science 2022-06-16 Teodor Chiaburu , Felix Biessmann , Frank Hausser

Water quality has a direct impact on industry, agriculture, and public health. Algae species are common indicators of water quality. It is because algal communities are sensitive to changes in their habitats, giving valuable knowledge on…

Computer Vision and Pattern Recognition · Computer Science 2022-03-24 Peisheng Qian , Ziyuan Zhao , Haobing Liu , Yingcai Wang , Yu Peng , Sheng Hu , Jing Zhang , Yue Deng , Zeng Zeng

Automatic plant classification is a challenging problem due to the wide biodiversity of the existing plant species in a fine-grained scenario. Powerful deep learning architectures have been used to improve the classification performance in…

Computer Vision and Pattern Recognition · Computer Science 2021-10-05 Voncarlos M. Araujo , Alceu S. Britto , Luiz E. S. Oliveira , Alessandro L. Koerich

Ground beetles are a highly sensitive and speciose biological indicator, making them vital for monitoring biodiversity. However, they are currently an underutilized resource due to the manual effort required by taxonomic experts to perform…

Computer Vision and Pattern Recognition · Computer Science 2026-01-27 S M Rayeed , Alyson East , Samuel Stevens , Sydne Record , Charles V Stewart

Accurate fish segmentation in underwater videos is challenging due to low visibility, variable lighting, and dynamic backgrounds, making fully-supervised methods that require manual annotation impractical for many applications. This paper…

Computer Vision and Pattern Recognition · Computer Science 2025-02-27 Alzayat Saleh , Marcus Sheaves , Dean Jerry , Mostafa Rahimi Azghadi

Image segmentation is a fundamental problem in biomedical image analysis. Recent advances in deep learning have achieved promising results on many biomedical image segmentation benchmarks. However, due to large variations in biomedical…

Computer Vision and Pattern Recognition · Computer Science 2017-06-16 Lin Yang , Yizhe Zhang , Jianxu Chen , Siyuan Zhang , Danny Z. Chen

Most deep-learning frameworks for understanding biological swarms are designed to fit perceptive models of group behavior to individual-level data (e.g., spatial coordinates of identified features of individuals) that have been separately…

Computational Engineering, Finance, and Science · Computer Science 2021-08-24 Taeyeong Choi , Benjamin Pyenson , Juergen Liebig , Theodore P. Pavlic