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Related papers: Deep Learning Classification of Lake Zooplankton

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We present an approach for automated in-situ monitoring of phytoplankton and zooplankton communities based on a dual magnification dark-field imaging microscope/camera. We describe the Dual Scripps Plankton Camera (DSPC) system and…

Populations and Evolution · Quantitative Biology 2021-09-17 E. Merz , T. Kozakiewicz , M. Reyes , C. Ebi , P. Isles , M. Baity-Jesi , P. Roberts , J. S. Jaffe , S. Dennis , T. Hardeman , N. Stevens , T. Lorimer , F. Pomati

The implementation of deep learning algorithms has brought new perspectives to plankton ecology. Emerging as an alternative approach to established methods, deep learning offers objective schemes to investigate plankton organisms in diverse…

Planktonic organisms are of fundamental importance to marine ecosystems: they form the basis of the food web, provide the link between the atmosphere and the deep ocean, and influence global-scale biogeochemical cycles. Scientists are…

Computer Vision and Pattern Recognition · Computer Science 2015-10-06 Eric C. Orenstein , Oscar Beijbom , Emily E. Peacock , Heidi M. Sosik

Monitoring plankton populations in situ is fundamental to preserve the aquatic ecosystem. Plankton microorganisms are in fact susceptible of minor environmental perturbations, that can reflect into consequent morphological and dynamical…

Computer Vision and Pattern Recognition · Computer Science 2022-09-15 Paolo Didier Alfano , Marco Rando , Marco Letizia , Francesca Odone , Lorenzo Rosasco , Vito Paolo Pastore

Planktonic organisms are key components of aquatic ecosystems and respond quickly to changes in the environment, therefore their monitoring is vital to understand the changes in the environment. Yet, monitoring plankton at appropriate…

Zooplankton images, like many other real world data types, have intrinsic properties that make the design of effective classification systems difficult. For instance, the number of classes encountered in practical settings is potentially…

Computer Vision and Pattern Recognition · Computer Science 2019-09-26 Ketil Malde , Hyeongji Kim

Plankton are small drifting organisms found throughout the world's oceans and can be indicators of ocean health. One component of this plankton community is the zooplankton, which includes gelatinous animals and crustaceans (e.g. shrimp),…

Computer Vision and Pattern Recognition · Computer Science 2025-05-30 Fukun Liu , Adam T. Greer , Gengchen Mai , Jin Sun

Plankton provide the foundation for life on earth. To advance our understanding of the marine ecosystem, for scientific, commercial and survival purposes, more in situ continuous monitoring and analysis of plankton is required. Cost,…

Image and Video Processing · Electrical Eng. & Systems 2020-05-28 Thomas G. Zimmerman , Vito P. Pastore , Sujoy K. Biswas , Simone Bianco

Oceans are the essential lifeblood of the Earth: they provide over 70% of the oxygen and over 97% of the water. Plankton and corals are two of the most fundamental components of ocean ecosystems, the former due to their function at many…

Computer Vision and Pattern Recognition · Computer Science 2019-12-11 Alessandra Lumini , Loris Nanni , Gianluca Maguolo

Plankton recognition is an important computer vision problem due to plankton's essential role in ocean food webs and carbon capture, highlighting the need for species-level monitoring. However, this task is challenging due to its…

Computer Vision and Pattern Recognition · Computer Science 2025-05-12 Joona Kareinen , Tuomas Eerola , Kaisa Kraft , Lasse Lensu , Sanna Suikkanen , Heikki Kälviäinen

Modern plankton high-throughput monitoring relies on deep learning classifiers for species recognition in water ecosystems. Despite satisfactory nominal performances, a significant challenge arises from Dataset Shift, which causes…

Computer Vision and Pattern Recognition · Computer Science 2024-01-26 Cheng Chen , Sreenath Kyathanahally , Marta Reyes , Stefanie Merkli , Ewa Merz , Emanuele Francazi , Marvin Hoege , Francesco Pomati , Marco Baity-Jesi

The deep learning revolution is touching all scientific disciplines and corners of our lives as a means of harnessing the power of big data. Marine ecology is no exception. These new methods provide analysis of data from sensors, cameras,…

Plankton recognition provides novel possibilities to study various environmental aspects and an interesting real-world context to develop domain adaptation (DA) methods. Different imaging instruments cause domain shift between datasets…

Computer Vision and Pattern Recognition · Computer Science 2024-02-09 Daniel Batrakhanov , Tuomas Eerola , Kaisa Kraft , Lumi Haraguchi , Lasse Lensu , Sanna Suikkanen , María Teresa Camarena-Gómez , Jukka Seppälä , Heikki Kälviäinen

Automatic identification of plant specimens from amateur photographs could improve species range maps, thus supporting ecosystems research as well as conservation efforts. However, classifying plant specimens based on image data alone is…

Computer Vision and Pattern Recognition · Computer Science 2021-10-06 Riccardo de Lutio , Yihang She , Stefano D'Aronco , Stefania Russo , Philipp Brun , Jan D. Wegner , Konrad Schindler

In this work, we present MorphoCluster, a software tool for data-driven, fast and accurate annotation of large image data sets. While already having surpassed the annotation rate of human experts, volume and complexity of marine data will…

Computer Vision and Pattern Recognition · Computer Science 2020-05-05 Simon-Martin Schröder , Rainer Kiko , Reinhard Koch

This paper considers open-set recognition (OSR) of plankton images. Plankton include a diverse range of microscopic aquatic organisms that have an important role in marine ecosystems as primary producers and as a base of food webs. Given…

Computer Vision and Pattern Recognition · Computer Science 2025-03-17 Joona Kareinen , Annaliina Skyttä , Tuomas Eerola , Kaisa Kraft , Lasse Lensu , Sanna Suikkanen , Maiju Lehtiniemi , Heikki Kälviäinen

Monitoring plankton distribution, particularly harmful phytoplankton, is vital for preserving aquatic ecosystems, regulating the global climate, and ensuring environmental protection. Traditional methods for monitoring are often…

Computer Vision and Pattern Recognition · Computer Science 2024-09-20 Aymane Khaldi , Rohaifa Khaldi

This paper considers self-supervised cross-modal coordination as a strategy enabling utilization of multiple modalities and large volumes of unlabeled plankton data to build models for plankton recognition. Automated imaging instruments…

Computer Vision and Pattern Recognition · Computer Science 2026-04-20 Joona Kareinen , Veikka Immonen , Tuomas Eerola , Lumi Haraguchi , Lasse Lensu , Kaisa Kraft , Sanna Suikkanen , Heikki Kälviäinen

Biodiversity conservation depends on accurate, up-to-date information about wildlife population distributions. Motion-activated cameras, also known as camera traps, are a critical tool for population surveys, as they are cheap and…

Machine Learning · Computer Science 2019-10-23 Mohammad Sadegh Norouzzadeh , Dan Morris , Sara Beery , Neel Joshi , Nebojsa Jojic , Jeff Clune

Deep learning methods for computer vision tasks show promise for automating the data analysis of camera trap images. Ecological camera traps are a common approach for monitoring an ecosystem's animal population, as they provide continual…

Computer Vision and Pattern Recognition · Computer Science 2018-03-30 Stefan Schneider , Graham W. Taylor , Stefan C. Kremer
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