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Developing accurate and efficient coarse-grained representations of proteins is crucial for understanding their folding, function, and interactions over extended timescales. Our methodology involves simulating proteins with molecular…

Biomolecules · Quantitative Biology 2023-10-11 Carles Navarro , Maciej Majewski , Gianni de Fabritiis

Phospholipid monolayers at the air-water interface serve as model systems for various biological interfaces, e.g. lung surfactant layers and outer leaflets of cell membranes. Although the dynamical (viscoelastic) properties of these…

Fluid Dynamics · Physics 2009-11-19 Siyoung Q. Choi , Todd M. Squires

It is well known that domain-decomposition-based multiscale mixed methods rely on interface spaces, defined on the skeleton of the decomposition, to connect the solution among the non-overlapping subdomains. Usual spaces, such as…

Numerical Analysis · Mathematics 2023-04-10 Franciane F. Rocha , Fabricio S. Sousa , Roberto F. Ausas , Felipe Pereira , Gustavo C. Buscaglia

The computational modeling of high-speed flows (e.g. hypersonic) and space plasmas is characterized by a plethora of complex physical phenomena, in particular involving strong oblique shocks, bow shocks and/or shock waves boundary layer…

Computational Physics · Physics 2025-11-19 Firas Ben Ameur , Andrea Lani

An approach to the mechanical behaviour of textile composites at the scale of their constituting fibres, using an implicit finite element simulation code, is proposed in this chapter. The approach is based on efficient methods and…

General Physics · Physics 2012-01-24 Damien Durville

We present a highly efficient molecular dynamics scheme for calculating the concentration profile of dopants implanted in group-IV alloy, and III-V zinc blende structure materials. Our program incorporates methods for reducing computational…

Materials Science · Physics 2009-10-31 Keith M. Beardmore , Niels Gronbech-Jensen

Various physics observables can be determined from the localisation of distinct edge-like features in distributions of measurement values. In this paper, we address the observation that neither differentiating nor fitting the measured…

High Energy Physics - Experiment · Physics 2021-07-14 Mikael Berggren , Stefano Caiazza , Madalina Chera , Jenny List

Quantum mechanics based ab-initio molecular dynamics (MD) simulation schemes offer an accurate and direct means to monitor the time-evolution of materials. Nevertheless, the expensive and repetitive energy and force computations required in…

Materials Science · Physics 2014-10-14 Venkatesh Botu , Rampi Ramprasad

We systematically validate the static local mesh refinement capabilities of a recently proposed IMEX-DG scheme implemented in the framework of the deal.II library. Non-conforming meshes are employed in atmospheric flow simulations to…

Atmospheric and Oceanic Physics · Physics 2025-08-27 Giuseppe Orlando , Tommaso Benacchio , Luca Bonaventura

A novel mathematical model for fiber-reinforced materials is proposed. It is based on a 1-dimensional beam model for the thin fiber structures, a flexible and general 3-dimensional elasticity model for the matrix and an overlapping domain…

Computational Engineering, Finance, and Science · Computer Science 2021-05-12 Ustim Khristenko , Stefan Schuß , Melanie Krüger , Felix Schmidt , Barbara Wohlmuth , Christian Hesch

To address the computational challenges of ab initio molecular dynamics and the accuracy limitations of empirical force fields, the introduction of machine learning force fields has proven effective in various systems including metals and…

Soft Condensed Matter · Physics 2023-12-18 Junbao Hu , Liyang Zhou , Jian Jiang

Machine learning force fields possess unprecedented potential in achieving both accuracy and efficiency in molecular simulations. Nevertheless, their application in organic systems is often hindered by structural collapse during simulation…

Computational Physics · Physics 2026-02-03 Junbao Hu , Dingyu Hou , Jian Jiang

One of the ultimate goals of computational modeling in condensed matter is to be able to accurately compute materials properties with minimal empirical information. First-principles approaches such as the density functional theory (DFT)…

Driven by the urgent demand for efficient cooling in microelectronics and advanced thermal management systems, difluoromethane (R32/CH2F2) has emerged as a promising candidate owing to its favorable thermophysical properties, including high…

Soft Condensed Matter · Physics 2025-09-29 Abibat Adekoya-Olowofela , Sukriti Manna , Subramanian KRS Sankaranarayanan

Polymer composite performance depends significantly on the polymer matrix, additives, processing conditions, and measurement setups. Traditional physics-based optimization methods for these parameters can be slow, labor-intensive, and…

In the paper, we present an integrated data-driven modeling framework based on process modeling, material homogenization, mechanistic machine learning, and concurrent multiscale simulation. We are interested in the injection-molded short…

Computational Engineering, Finance, and Science · Computer Science 2020-03-24 Zeliang Liu , Haoyan Wei , Tianyu Huang , C. T. Wu

We present a multimodal deep learning (MDL) framework for predicting physical properties of a 10-dimensional acrylic polymer composite material by merging physical attributes and chemical data. Our MDL model comprises four modules,…

Soft Condensed Matter · Physics 2023-11-28 Shun Muroga , Yasuaki Miki , Kenji Hata

Hybrid particle-field methods are computationally efficient approaches for modelling soft matter systems. So far applications of these methodologies have been limited to constant volume conditions. Here, we reformulate particle-field…

Refractive index matching (RIM) is a powerful tool for multiphase flow studies as it eliminates optical distortions and enables high-fidelity tomographic measurements near solid-fluid interfaces of freely moving solids in the flow. However,…

Fluid Dynamics · Physics 2026-02-19 Jibu Tom Jose , Aviel Ben-Harosh , Omri Ram

Understanding stress-strain behavior of asphalt pavement under repetitive traffic loading is of critical importance to predict pavement performance and service life. For viscoelastic materials, the stress-strain relationship can be…

Computational Engineering, Finance, and Science · Computer Science 2019-05-17 Parnian Ghasemi , Shibin Lin , Derrick K. Rollins , R. Christopher Williams