Related papers: Sharp upper and lower bounds on a restricted class…
Phylogenetic trees are used to model evolution: leaves are labelled to represent contemporary species ("taxa") and interior vertices represent extinct ancestors. Informally, convex characters are measurements on the contemporary species in…
Phylogenetic trees are used to model evolution: leaves are labelled to represent contemporary species ("taxa") and interior vertices represent extinct ancestors. Informally, convex characters are measurements on the contemporary species in…
Phylogenetic trees are frequently used to model evolution. Such trees are typically reconstructed from data like DNA, RNA, or protein alignments using methods based on criteria like maximum parsimony (amongst others). Maximum parsimony has…
Phylogenetic (i.e. leaf-labeled) trees play a fundamental role in evolutionary research. A typical problem is to reconstruct such trees from data like DNA alignments (whose columns are often referred to as characters), and a simple…
In evolutionary biology, phylogenetic trees are commonly inferred from a set of characters (partitions) of a collection of biological entities (e.g., species or individuals in a population). Such characters naturally arise from molecular…
For a graph $G$, let $c_k(G)$ be the number of spanning trees of $G$ with maximum degree at most $k$. For $k \ge 3$, it is proved that every connected $n$-vertex $r$-regular graph $G$ with $r \ge \frac{n}{k+1}$ satisfies $$ c_k(G)^{1/n} \ge…
We prove that every connected graph with $s$ vertices of degree not 2 has a spanning tree with at least ${1\over 4}(s-2)+2$ leaves. Let $G$ be a be a connected graph of girth $g$ with $v>1$ vertices. Let maximal chain of successively…
A $k$-block in a graph $G$ is a maximal set of at least $k$ vertices no two of which can be separated in $G$ by deleting fewer than $k$ vertices. The block number $\beta(G)$ of $G$ is the maximum integer $k$ for which $G$ contains a…
An out-tree $T$ of a directed graph $D$ is a rooted tree subgraph with all arcs directed outwards from the root. An out-branching is a spanning out-tree. By $l(D)$ and $l_s(D)$ we denote the maximum number of leaves over all out-trees and…
In phylogenetics, a key problem is to construct evolutionary trees from collections of characters where, for a set X of species, a character is simply a function from X onto a set of states. In this context, a key concept is convexity,…
The boxicity of a graph G, denoted as box(G) is defined as the minimum integer t such that G is an intersection graph of axis-parallel t-dimensional boxes. A graph G is a k-leaf power if there exists a tree T such that the leaves of the…
The induced arboricity of a graph $G$ is the smallest number of induced forests covering the edges of $G$. This is a well-defined parameter bounded from above by the number of edges of $G$ when each forest in a cover consists of exactly one…
Let $G$ be a countable group that splits as a free product of groups of the form $G=G_1\ast\dots\ast G_k\ast F_N$, where $F_N$ is a finitely generated free group. We identify the closure of the outer space…
Phylogenetic networks are directed acyclic graphs that depict the genomic evolution of related taxa. Reticulation nodes in such networks (nodes with more than one parent) represent reticulate evolutionary events, such as recombination,…
Given two phylogenetic trees on the same set of taxa X, the maximum parsimony distance d_MP is defined as the maximum, ranging over all characters c on X, of the absolute difference in parsimony score induced by c on the two trees. In this…
In this paper, we study some spanning trees with bounded degree and leaf degree from eigenvalues. For any integer $k\geq2$, a $k$-tree is a spanning tree in which every vertex has degree no more than $k$. Let $T$ be a spanning tree of a…
Consider a drawing of a graph $G$ in the plane such that crossing edges are coloured differently. The minimum number of colours, taken over all drawings of $G$, is the classical graph parameter "thickness". By restricting the edges to be…
Let $k$, $d$ be a positive integer, $G$ be a connected graph of order $n$, $T$ be a tree. The leaf distance of a tree is defined as the minimum distance between any two leaves. For $v\in V(T)$, the leaf degree of $v$ in $T$ is the number of…
A spanning tree $T$ of a connected graph $G$ is a subgraph of $G$ that is a tree covers all vertices of $G$. The leaf distance of $T$ is defined as the minimum of distances between any two leaves of $T$. A fractional matching of a graph $G$…
An evolutionary tree is a rooted tree where each internal vertex has at least two children and where the leaves are labeled with distinct symbols representing species. Evolutionary trees are useful for modeling the evolutionary history of…