Related papers: Sharp upper and lower bounds on a restricted class…

Let $k$ and $n$ be integers such that $1\leq k \leq n-1$, and let $G$ be a simple graph of order $n$. The $k$-token graph $F_k(G)$ of $G$ is the graph whose vertices are the $k$-subsets of $V(G)$, where two vertices are adjacent in $F_k(G)$…

The maximum agreement forest (MAF) problem in phylogenetics takes as input a set t >= 2 of binary phylogenetic trees T on the same set of taxa X. It asks for a partition of X into the smallest number of blocks such that the subtrees induced…

We introduce a graph partitioning problem motivated by computational topology and propose two algorithms that produce approximate solutions. Specifically, given a weighted, undirected graph $G$ and a positive integer $k$, we desire to find…

Treewidth is an important structural graph parameter that quantifies how closely a graph resembles a tree-like structure. It has applications in many algorithmic and combinatorial problems. In this paper, we study the treewidth of outer…

The main goal of this paper is to study the topological properties of tensors in tree-based Tucker format. These formats include the Tucker format and the Hierarchical Tucker format. A property of the so-called minimal subspaces is used for…

A $k$-ranking of a graph $G$ is a labeling of its vertices from $\{1,\ldots,k\}$ such that any nontrivial path whose endpoints have the same label contains a larger label. The least $k$ for which $G$ has a $k$-ranking is the ranking number…

We show that for any fixed dense graph G and bounded-degree tree T on the same number of vertices, a modest random perturbation of G will typically contain a copy of T . This combines the viewpoints of the well-studied problems of embedding…

Let $k\geq2$ be an integer. A tree $T$ is called a $k$-tree if $d_T(v)\leq k$ for each $v\in V(T)$, that is, the maximum degree of a $k$-tree is at most $k$. Let $\lambda_1(D(G))$ denote the distance spectral radius in $G$, where $D(G)$…

Bounds on the log partition function are important in a variety of contexts, including approximate inference, model fitting, decision theory, and large deviations analysis. We introduce a new class of upper bounds on the log partition…

A tree with at most k leaves is called k-ended tree, and a tree with exactly k leaves is called k-end tree, where a leaf is a vertex of degree one. Contraction of a graph G along the edge e means deleting the edge e and identifying its end…

Construction of phylogenetic trees and networks for extant species from their characters represents one of the key problems in phylogenomics. While solution to this problem is not always uniquely defined and there exist multiple methods for…

Let $\T_{n}$ be the set of rooted labeled trees on $\set{0,...,n}$. A maximal decreasing subtree of a rooted labeled tree is defined by the maximal subtree from the root with all edges being decreasing. In this paper, we study a new…

A linear forest is a union of vertex-disjoint paths, and the linear arboricity of a graph $G$, denoted by $\operatorname{la}(G)$, is the minimum number of linear forests needed to partition the edge set of $G$. Clearly,…

Trees without vertices of degree $2$ are sometimes named topological trees. In this work, we bring forward the study of the inducibility of (rooted) topological trees with a given number of leaves. The inducibility of a topological tree $S$…

Phylogenetic networks provide a way to describe and visualize evolutionary histories that have undergone so-called reticulate evolutionary events such as recombination, hybridization or horizontal gene transfer. The level k of a network…

The tree spanner problem for a graph $G$ is as follows: For a given integer $k$, is there a spanning tree $T$ of $G$ (called a tree $k$-spanner) such that the distance in $T$ between every pair of vertices is at most $k$ times their…

We study the topological structure of random geometric forests $G$ in the Euclidean plane under mild assumptions: non-crossing edges, stationarity, and finite edge intensity. The framework covers a broad range of constructions, including…

A \emph{tree-partition} of a graph $G$ is a proper partition of its vertex set into `bags', such that identifying the vertices in each bag produces a forest. The \emph{tree-partition-width} of $G$ is the minimum number of vertices in a bag…

A "tree-partition" of a graph $G$ is a partition of $V(G)$ such that identifying the vertices in each part gives a tree. It is known that every graph with treewidth $k$ and maximum degree $\Delta$ has a tree-partition with parts of size…

We prove that finding a rooted subtree with at least $k$ leaves in a digraph is a fixed parameter tractable problem. A similar result holds for finding rooted spanning trees with many leaves in digraphs from a wide family $\cal L$ that…