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We consider the lateral diffusion of a protein interacting with the curvature of the membrane. The interaction energy is minimized if the particle is at a membrane position with a certain curvature that agrees with the spontaneous curvature…

Soft Condensed Matter · Physics 2008-12-10 Stefan M. Leitenberger , Ellen Reister-Gottfried , Udo Seifert

The velocity relaxation of an impulsively forced spherical particle in a fluid confined by two parallel plane walls is studied using a direct numerical simulation approach. During the relaxation process, the momentum of the particle is…

Fluid Dynamics · Physics 2015-06-15 Rei Tatsumi , Ryoichi Yamamoto

When a stationary reflecting wall acting as a perfect mirror for an atomic beam with well defined incident velocity is suddenly removed, the density profile develops during the time evolution an oscillatory pattern known as diffraction in…

Quantum Physics · Physics 2009-11-13 A. del Campo , J. G. Muga , M. Kleber

Nonlinear diffusion is studied in the presence of multiplicative noise. The nonlinearity can be viewed as a ``wall'' limiting the motion of the diffusing field. A dynamic phase transition occurs when the system ``unbinds'' from the wall.…

Statistical Mechanics · Physics 2009-10-30 M. A. Muñoz , T. Hwa

The rectification of a single file of attracting particles subjected to a low frequency ac drive is proposed as a working mechanism for particle shuttling in an asymmetric narrow channel. Increasing the particle attraction results in the…

Statistical Mechanics · Physics 2011-03-17 Andrey Pototsky , Andrew J. Archer , Michael Bestehorn , Domnic Merkt , Sergey Savel'ev , Fabio Marchesoni

We study suspensions of rigid particles in a plane Couette flow with deformable elastic walls. We find that, in the limit of vanishing inertia, the elastic walls induce shear thinning of the suspension flow such that the effective viscosity…

Soft Condensed Matter · Physics 2019-06-25 Marco Edoardo Rosti , Mehdi Niazi Ardekani , Luca Brandt

Transmission through sub-wavelength apertures in perfect metals is expected to be strongly suppressed. However, by structural engineering of the apertures, we numerically demonstrate that the transmission of transverse electric waves…

Optics · Physics 2010-03-12 Sanshui Xiao , Liang Peng , Niels Asger Mortensen

We study the effect of varying the mass and volume fraction of a suspension of rigid spheres dispersed in a turbulent channel flow. We performed several Direct Numerical Simulations using an Immersed Boundary Method for finite-size…

Fluid Dynamics · Physics 2016-04-28 Walter Fornari , Alberto Formenti , Francesco Picano , Luca Brandt

In light of some recent experiments on quasi two-dimensional (2D) turbulent channel flow we provide here a model of the ideal case, for the sake of comparison. The ideal 2D channel flow differs from its 3D counterpart by having a second…

Fluid Dynamics · Physics 2009-04-21 Victor S. L'vov , Itamar Procaccia , Oleksii Rudenko

We investigate the diffusive properties of energy fluctuations in a one-dimensional diatomic chain of hard-point particles interacting through a square--well potential. The evolution of initially localized infinitesimal and finite…

Statistical Mechanics · Physics 2009-11-13 L. Delfini , S. Denisov , S. Lepri , R. Livi , P. K. Mohanty , A. Politi

We propose a new mechanism to alter the nature of the potential barriers when a biased Brownian particle under goes a constrained motion in narrow, periodic channel. By changing the angle of the external bias, the nature of the potential…

Statistical Mechanics · Physics 2010-12-06 P. S. Burada , G. Schmid

Being motivated by recent progress in nanopore sensing, we develop a theory of the effect of large analytes, or blockers, trapped within the nanopore confines, on diffusion flow of small solutes. The focus is on the nanopore diffusion…

Quantitative Methods · Quantitative Biology 2022-07-20 Leonardo Dagdug , Alexei T. Skvortsov , Alexander M. Berezhkovskii , Sergey M. Bezrukov

Single-file diffusion refers to the Brownian motion in narrow channels where particles cannot pass each other. In such processes, the diffusion of a tagged particle is typically normal at short times and becomes subdiffusive at long times.…

Statistical Mechanics · Physics 2026-02-23 Sören Schweers , Alexander P. Antonov , Artem Ryabov , Philipp Maass

We investigate single-particle diffusion in a two-state Langevin model where the friction coefficient randomly switches between low-friction (liquid-like) and high-friction (glassy-like) states. The dynamics are governed by the ratio…

Chemical Physics · Physics 2025-12-03 Fivos Perakis , Takeshi Kawasaki , Shinji Saito

The transport of an infinitely thin, hard rod in a random, dense array of point obstacles is investigated by molecular dynamics simulations. Our model mimics the sterically hindered dynamics in dense needle liquids. The center-of-mass…

Statistical Mechanics · Physics 2008-09-22 Felix Höfling , Erwin Frey , Thomas Franosch

How topological defects affect the dynamics of particles hopping between lattice sites of a distorted, two-dimensional crystal is addressed. Perturbation theory and numerical simulations show that weak, short-ranged topological disorder…

Statistical Mechanics · Physics 2007-05-23 Ligang Chen , Michael W. Deem

The long-time diffusion of two-dimensional dusty plasmas on a one-dimensional periodic substrate with varied widths is investigated using Langevin dynamical simulations. When the substrate is narrow and the dust particles form a single row,…

Plasma Physics · Physics 2024-04-22 W. Li , C. Reichhardt , C. J. O. Reichhardt , M. S. Murillo , Yan Feng

Depending on their mechanism of self-propulsion, active particles can exhibit a time-dependent, often periodic, propulsion velocity. The precise propulsion velocity profile determines their mean square displacement and their effective…

Soft Condensed Matter · Physics 2024-05-06 Arnau Jurado Romero , Carles Calero , Rossend Rey

Light diffusion is usually associated with thick, opaque media. Indeed, multiple scattering is necessary for the onset of the diffusive regime and such condition is generally not met in almost transparent media. Nonetheless, at long enough…

Based on a coarse-grained model, we carry out molecular dynamics simulations to analyze the diffusion of a small tracer particle inside a cylindrical channel whose inner wall is covered with randomly grafted short polymeric chains. We…

Soft Condensed Matter · Physics 2013-06-20 Rajarshi Chakrabarti , Stefan Kesselheim , Peter Kosovan , Christian Holm