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We give an isomorphism test for graphs of Euler genus $g$ running in time $2^{O(g^4 \log g)}n^{O(1)}$. Our algorithm provides the first explicit upper bound on the dependence on $g$ for an fpt isomorphism test parameterized by the Euler…

Data Structures and Algorithms · Computer Science 2024-03-08 Daniel Neuen

The WL-rank of a graph $\Gamma$ is defined to be the rank of the coherent configuration of $\Gamma$. The WL-dimension of $\Gamma$ is defined to be the smallest positive integer $m$ for which $\Gamma$ is identified by the $m$-dimensional…

Combinatorics · Mathematics 2021-12-14 Grigory Ryabov , Leonid Shalaginov

A graph is said to be distance-hereditary if the distance function in every connected induced subgraph is the same as in the graph itself. We prove that the ordinary Weisfeiler-Leman algorithm correctly tests the isomorphism of any two…

Combinatorics · Mathematics 2020-05-26 Alexander L. Gavrilyuk , Roman Nedela , Ilia Ponomarenko

In this paper, we present a novel interpretation of the so-called Weisfeiler-Lehman (WL) distance, introduced by Chen et al. (2022), using concepts from stochastic processes. The WL distance aims at comparing graphs with node features, has…

Machine Learning · Computer Science 2023-10-03 Samantha Chen , Sunhyuk Lim , Facundo Mémoli , Zhengchao Wan , Yusu Wang

Determining whether two graphs are structurally identical is a fundamental problem with applications spanning mathematics, computer science, chemistry, and network science. Despite decades of study, graph isomorphism remains a challenging…

Computational Physics · Physics 2026-04-10 Sara Najem , Amer E. Mouawad

Colour refinement is a basic algorithmic routine for graph isomorphism testing, appearing as a subroutine in almost all practical isomorphism solvers. It partitions the vertices of a graph into "colour classes" in such a way that all…

Data Structures and Algorithms · Computer Science 2014-05-01 Martin Grohe , Kristian Kersting , Martin Mladenov , Erkal Selman

We show that feasibility of the $t^\text{th}$ level of the Lasserre semidefinite programming hierarchy for graph isomorphism can be expressed as a homomorphism indistinguishability relation. In other words, we define a class $\mathcal{L}_t$…

Combinatorics · Mathematics 2024-09-11 David E. Roberson , Tim Seppelt

There is no known polynomial-time algorithm for graph isomorphism testing, but elementary combinatorial "refinement" algorithms seem to be very efficient in practice. Some philosophical justification is provided by a classical theorem of…

Combinatorics · Mathematics 2025-10-17 Michael Anastos , Matthew Kwan , Benjamin Moore

We prove that the number of iterations taken by the Weisfeiler-Leman algorithm for configurations coming from Schreier graphs is closely linked to the diameter of the graphs themselves: an upper bound is found for general Schreier graphs,…

Combinatorics · Mathematics 2019-11-19 Daniele Dona

As a classical approach on graph learning, the propagation-aggregation methodology is widely exploited by many of Graph Neural Networks (GNNs), wherein the representation of a node is updated by aggregating representations from itself and…

Machine Learning · Computer Science 2025-12-08 Xiao Yue , Bo Liu , Feng Zhang , Guangzhi Qu

In these lecture notes, we first recall the connection between graph neural networks, Weisfeiler-Lehman tests and logics such as first-order logic and graded modal logic. We then present a modal logic in which counting modalities appear in…

Logic in Computer Science · Computer Science 2025-10-14 François Schwarzentruber

In 1994, Thomassen proved that every planar graph is 5-list-colorable. In 1995, Thomassen proved that every planar graph of girth at least five is 3-list-colorable. His proofs naturally lead to quadratic-time algorithms to find such…

Combinatorics · Mathematics 2019-11-07 Luke Postle

The coherent configuration $\mathsf{WL}(X)$ of a graph $X$ is the smallest coherent configuration on the vertices of $X$ that contains the edge set of $X$ as a relation. The aim of the paper is to study $\mathsf{WL}(X)$ when $X$ is a…

Combinatorics · Mathematics 2024-11-06 Jinzhuan Cai , Jin Guo , Alexander L. Gavrilyuk , Ilia Ponomarenko

Graph neural networks are prominent models for representation learning over graph-structured data. While the capabilities and limitations of these models are well-understood for simple graphs, our understanding remains incomplete in the…

Machine Learning · Computer Science 2023-10-27 Xingyue Huang , Miguel Romero Orth , İsmail İlkan Ceylan , Pablo Barceló

Subgraph representation learning has been effective in solving various real-world problems. However, current graph neural networks (GNNs) produce suboptimal results for subgraph-level tasks due to their inability to capture complex…

Machine Learning · Computer Science 2025-11-12 Dongkwan Kim , Alice Oh

Link prediction is one important application of graph neural networks (GNNs). Most existing GNNs for link prediction are based on one-dimensional Weisfeiler-Lehman (1-WL) test. 1-WL-GNNs first compute node representations by iteratively…

Machine Learning · Computer Science 2022-06-22 Yang Hu , Xiyuan Wang , Zhouchen Lin , Pan Li , Muhan Zhang

A circulant graph is a Cayley graph of a finite cyclic group. The Weisfeiler-Leman-dimension of a circulant graph $X$ with respect to the class of all circulant graphs is the smallest positive integer~$m$ such that the $m$-dimensional…

Combinatorics · Mathematics 2024-10-01 Yulai Wu , Ilia Ponomarenko

In recent years, we have seen several approaches to the graph isomorphism problem based on "generic" mathematical programming or algebraic (Gr\"obner basis) techniques. For most of these, lower bounds have been established. In fact, it has…

Computational Complexity · Computer Science 2016-07-18 Christoph Berkholz , Martin Grohe

Graph neural networks (GNNs) are deep learning architectures for machine learning problems on graphs. It has recently been shown that the expressiveness of GNNs can be characterised precisely by the combinatorial Weisfeiler-Leman algorithms…

Machine Learning · Computer Science 2022-01-11 Martin Grohe

Random walk kernels have been introduced in seminal work on graph learning and were later largely superseded by kernels based on the Weisfeiler-Leman test for graph isomorphism. We give a unified view on both classes of graph kernels. We…

Machine Learning · Computer Science 2023-01-18 Nils M. Kriege
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