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In this paper, we revisit the split decomposition of graphs and give new combinatorial and algorithmic results for the class of totally decomposable graphs, also known as the distance hereditary graphs, and for two non-trivial subclasses,…

Discrete Mathematics · Computer Science 2011-04-19 Emeric Gioan , Christophe Paul

We introduce a simple initial working system in which relations (such as part-whole) are directly represented via an architecture with operating and learning rules fundamentally distinct from standard artificial neural network methods.…

Machine Learning · Computer Science 2026-02-06 E Bowen , R Granger , A Rodriguez

A vertex $v$ of a connected graph $G$ is said to be a boundary vertex of $G$ if for some other vertex $u$ of $G$, no neighbor of $v$ is further away from $u$ than $v$. The boundary $\partial(G)$ of $G$ is the set of all of its boundary…

Combinatorics · Mathematics 2024-12-30 José Cáceres , Ignacio M. Pelayo

The modular decomposition of a graph $G$ is a natural construction to capture key features of $G$ in terms of a labeled tree $(T,t)$ whose vertices are labeled as "series" ($1$), "parallel" ($0$) or "prime". However, full information of $G$…

Combinatorics · Mathematics 2023-05-05 Marc Hellmuth , Guillaume E. Scholz

Galinier, Habib, and Paul introduced the reduced clique graph of a chordal graph $G$. The nodes of the reduced clique graph are the maximal cliques of $G$, and two nodes are joined by an edge if and only if they form a non-disjoint…

Combinatorics · Mathematics 2024-04-15 Dillon Mayhew , Andrew Probert

We present a surprisingly new connection between two well-studied combinatorial classes: rooted connected chord diagrams on one hand, and rooted bridgeless combinatorial maps on the other hand. We describe a bijection between these two…

Combinatorics · Mathematics 2017-10-18 Julien Courtiel , Karen Yeats , Noam Zeilberger

Distance-based methods such as UPGMA (Unweighted Pair Group Method with Arithmetic Mean) continue to play a significant role in phylogenetic research. We use polyhedral combinatorics to analyze the natural subdivision of the positive…

Populations and Evolution · Quantitative Biology 2012-06-11 Ruth Davidson , Seth Sullivant

We propose a slightly revised Miller-Hagberg (MH) algorithm that efficiently generates a random network from a given expected degree sequence. The revision was to replace the approximated edge probability between a pair of nodes with a…

Discrete Mathematics · Computer Science 2017-11-21 Hiroki Sayama

A $\mathbb{T}$-gain graph is a simple graph in which a unit complex number is assigned to each orientation of an edge, and its inverse is assigned to the opposite orientation. The associated adjacency matrix is defined canonically, and is…

Combinatorics · Mathematics 2023-04-18 Aniruddha Samanta , M. Rajesh Kannan

A flow graph $G=(V,E,s)$ is a directed graph with a distinguished start vertex $s$. The dominator tree $D$ of $G$ is a tree rooted at $s$, such that a vertex $v$ is an ancestor of a vertex $w$ if and only if all paths from $s$ to $w$…

Data Structures and Algorithms · Computer Science 2016-08-24 Loukas Georgiadis , Aikaterini Karanasiou , Giannis Konstantinos , Luigi Laura

In real life, it is always an urge to reach our goal in minimum effort i.e., it should have a minimum constrained path. The path may be shortest route in practical life, either physical or electronic medium. The scenario is to represents…

Neural and Evolutionary Computing · Computer Science 2014-01-14 Sounak Sadhukhan , Samar Sen Sarma

Given a complete graph with positive weights on its edges, we define the weight of a subset of edges as the product of weights of the edges in the subset and consider sums (partition functions) of weights over subsets of various kinds:…

Combinatorics · Mathematics 2013-05-14 Alexander Barvinok

Hypergraphs are structures that can be decomposed or described; in other words they are recursively countable. Here, we get exact and asymptotic enumeration results on hypergraphs by means of exponential generating functions. The number of…

Discrete Mathematics · Computer Science 2008-06-20 Tsiriniaina Andriamampianina

Pairwise ordered tree alignment are combinatorial objects that appear in RNA secondary structure comparison. However, the usual representation of tree alignments as supertrees is ambiguous, i.e. two distinct supertrees may induce identical…

Quantitative Methods · Quantitative Biology 2016-03-08 Cedric Chauve , Julien Courtiel , Yann Ponty

Combinatorial optimization algorithms for graph problems are usually designed afresh for each new problem with careful attention by an expert to the problem structure. In this work, we develop a new framework to solve any combinatorial…

Measuring the complexity of tree structures can be beneficial in areas that use tree data structures for storage, communication, and processing purposes. This complexity can then be used to compress tree data structures to their…

Information Theory · Computer Science 2023-09-19 Amirmohammad Farzaneh , Mihai-Alin Badiu , Justin P. Coon

We study the following problem that is motivated by demand-aware network design: Given a tree~$G$, the task is to find a binary tree~$H$ on the same vertex set. The objective is to minimize the sum of distances in~$H$ between vertex pairs…

Data Structures and Algorithms · Computer Science 2026-04-23 Leon Kellerhals , Mitja Krebs , André Nichterlein , Stefan Schmid

The class of graph deletion problems has been extensively studied in theoretical computer science, particularly in the field of parameterized complexity. Recently, a new notion of graph deletion problems was introduced, called deletion to…

Data Structures and Algorithms · Computer Science 2026-05-20 Ashwin Jacob , Diptapriyo Majumdar , Meirav Zehavi

A module of a graph G is a set of vertices that have the same set of neighbours outside. Modules of a graphs form a so-called partitive family and thereby can be represented by a unique tree MD(G), called the modular decomposition tree.…

Discrete Mathematics · Computer Science 2024-07-15 Derek Corneil , Michel Habib , Christophe Paul , Marc Tedder

Studying the virtual Euler characteristic of the moduli space of curves, Harer and Zagier compute the generating function $C_g(z)$ of unicellular maps of genus $g$. They furthermore identify coefficients, $\kappa^{\star}_{g}(n)$, which…

Combinatorics · Mathematics 2014-06-25 Thomas J. X. Li , Christian M. Reidys