Related papers: Combinatorial generation via permutation languages…
Our main result is a full classification, for every connected graph $H$, of the computational complexity of Steiner Forest on $H$-subgraph-free graphs. To obtain this dichotomy, we establish the following new algorithmic, hardness, and…
Recombining trinomial trees are a workhorse for modeling discrete-event systems in option pricing, logistics, and feedback control. Because each node stores a state-dependent quantity, a depth-$D$ tree naively yields $\mathcal{O}(3^{D})$…
Phylogenetic networks are an extension of phylogenetic trees that allow for the representation of reticulate evolution events. One of the classes of networks that has gained the attention of the scientific community over the last years is…
An undirected graphical model is a joint probability distribution defined on an undirected graph G*, where the vertices in the graph index a collection of random variables and the edges encode conditional independence relationships among…
Algorithms to generate various combinatorial structures find tremendous importance in computer science. In this paper, we begin by reviewing an algorithm proposed by Rohl that generates all unique permutations of a list of elements which…
We introduce a graph partitioning problem motivated by computational topology and propose two algorithms that produce approximate solutions. Specifically, given a weighted, undirected graph $G$ and a positive integer $k$, we desire to find…
For a graph $G = (V, E)$, the $\gamma$-graph of $G$, denoted $G(\gamma) = (V(\gamma), E(\gamma))$, is the graph whose vertex set is the collection of minimum dominating sets, or $\gamma$-sets of $G$, and two $\gamma$-sets are adjacent in…
Let $G=(V,E)$ be a bipartite graph embedded in a plane (or $n$-holed torus). Two subgraphs of $G$ differ by a {\it $Z$-transformation} if their symmetric difference consists of the boundary edges of a single face---and if each subgraph…
Tree-child networks are a recently-described class of directed acyclic graphs that have risen to prominence in phylogenetics (the study of evolutionary trees and networks). Although these networks have a number of attractive mathematical…
Motivated by the question of how macromolecules assemble, the notion of an {\it assembly tree} of a graph is introduced. Given a graph $G$, the paper is concerned with enumerating the number of assembly trees of $G$, a problem that applies…
For an undirected graph G, we consider the following problems: given a fixed graph H, can we partition the vertices of G into two non-empty sets A and B such that neither the induced graph G[A] nor G[B] contain H (i) as a subgraph? (ii) as…
Gomory-Hu (GH) Trees are a classical sparsification technique for graph connectivity. It is one of the fundamental models in combinatorial optimization which also continually finds new applications, most recently in social network analysis.…
In enumerative combinatorics, it is often a goal to enumerate both labeled and unlabeled structures of a given type. The theory of combinatorial species is a novel toolset which provides a rigorous foundation for dealing with the…
A $\textit{compression scheme}$ $A$ for a class $\mathbb{G}$ of graphs consists of an encoding algorithm $\textit{Encode}_A$ that computes a binary string $\textit{Code}_A(G)$ for any given graph $G$ in $\mathbb{G}$ and a decoding algorithm…
The Exponential Formula allows one to enumerate any class of combinatorial objects built by choosing a set of connected components and placing a structure on each connected component which depends only on its size. There are multiple…
Let $\Pi$ be a hereditary graph class. The problem of deletion to $\Pi$, takes as input a graph $G$ and asks for a minimum number (or a fixed integer $k$) of vertices to be deleted from $G$ so that the resulting graph belongs to $\Pi$. This…
For a fixed finite collection of graphs ${\cal F}$, the ${\cal F}$-M-DELETION problem asks, given an $n$-vertex input graph $G,$ for the minimum number of vertices that intersect all minor models in $G$ of the graphs in ${\cal F}$. by…
In the standard CONGEST model for distributed network computing, it is known that "global" tasks such as minimum spanning tree, diameter, and all-pairs shortest paths, consume large bandwidth, for their running-time is…
We define some new sequences of recursively constructed random combinatorial trees, and show that, after properly rescaling graph distance and equipping the trees with the uniform measure on vertices, each sequence converges almost surely…
Given a graph $G$, the maximal induced subgraphs problem asks to enumerate all maximal induced subgraphs of $G$ that belong to a certain hereditary graph class. While its optimization version, known as the minimum vertex deletion problem in…