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We provide an overview of the emergence of large language models for scientific computing applications. We highlight use cases that involve natural language processing of scientific documents and specialized languages designed to describe…

Computation and Language · Computer Science 2024-06-12 Christopher Culver , Peter Hicks , Mihailo Milenkovic , Sanjif Shanmugavelu , Tobias Becker

Recursive calls over recursive data are useful for generating probability distributions, and probabilistic programming allows computations over these distributions to be expressed in a modular and intuitive way. Exact inference is also…

Programming Languages · Computer Science 2023-03-28 David Chiang , Colin McDonald , Chung-chieh Shan

Bootstrapping is a popular and computationally demanding resampling method used for measuring the accuracy of sample estimates and assisting with statistical inference. R is a freely available language and environment for statistical…

Computation · Statistics 2014-01-27 T. M. Sloan , M. Piotrowski , T. Forster , P. Ghazal

Computational reproducibility of scientific results, that is, the execution of a computational experiment (e.g., a script) using its original settings (data, code, etc.), should always be possible. However, reproducibility has become a…

Human-Computer Interaction · Computer Science 2025-04-15 Lázaro Costa , Susana Barbosa , Jácome Cunha

Software is increasingly produced in the form of ecosystems, collections of interdependent components maintained by a distributed community. These ecosystems act as network organizations, not markets, and thus often lack actionable…

Software Engineering · Computer Science 2020-12-14 Christopher Bogart , James Howison , James Herbsleb

MaRDI Open Interfaces is a software project aimed at improving reuse and interoperability in Scientific Computing by alleviating the difficulties of crossing boundaries between different programming languages, in which numerical packages…

Mathematical Software · Computer Science 2025-11-18 Dmitry I. Kabanov , Stephan Rave , Mario Ohlberger

In recent years, conversational recommender system (CRS) has received much attention in the research community. However, existing studies on CRS vary in scenarios, goals and techniques, lacking unified, standardized implementation or…

Computation and Language · Computer Science 2021-01-05 Kun Zhou , Xiaolei Wang , Yuanhang Zhou , Chenzhan Shang , Yuan Cheng , Wayne Xin Zhao , Yaliang Li , Ji-Rong Wen

This paper presents a MATLAB toolbox for implementing robust-to-early termination model predictive control, abbreviated as REAP, which is designed to ensure a sub-optimal yet feasible solution when MPC computations are prematurely…

Optimization and Control · Mathematics 2025-07-02 Mohsen Amiri , Mehdi Hosseinzadeh

As machine learning has become increasingly popular over the last few decades, so too has the number of machine learning interfaces for implementing these models. Whilst many R libraries exist for machine learning, very few offer extended…

Computation · Statistics 2021-03-19 Raphael Sonabend , Franz J. Király , Andreas Bender , Bernd Bischl , Michel Lang

Progress in hardware, algorithms, and force fields are pushing the scope of molecular dynamics (MD) simulations towards the length- and time scales of complex biochemical processes. This creates a need for developing advanced analysis…

Computational Physics · Physics 2018-11-08 Jon Kapla , Martin Lindén

We introduce QCLAB, an object-oriented MATLAB toolbox for constructing, representing, and simulating quantum circuits. Designed with an emphasis on numerical stability, efficiency, and performance, QCLAB provides a reliable platform for…

Quantum Physics · Physics 2025-03-06 Sophia Keip , Daan Camps , Roel Van Beeumen

Objective of this work is to integrate high performance computing (HPC) technologies and bioacoustics data-mining capabilities by offering a MATLAB-based toolbox called Raven-X. Raven-X will provide a hardware-independent solution, for…

Sound · Computer Science 2016-10-13 Peter J. Dugan , Holger Klinck , Marie A. Roch , Tyler A. Helble

We introduce a novel software abstraction termed "model caller," acting as an intermediary for AI and ML model calling, advocating its transformative utility beyond existing model-serving frameworks. This abstraction offers multiple…

Computers and Society · Computer Science 2024-06-25 Mukesh Dalal

Complex software-driven systems often interleave distributed, concurrent computation processes with physical interactions with the environment. Developing these systems more efficiently and safely can be achieved by employing actionable,…

Software Engineering · Computer Science 2025-11-20 Hiep Hong Trinh , Federico Ciccozzi , Abu Naser Masud , Marjan Sirjani , Mikael Sjödin

MathLink is Wolfram Research's protocol for communicating with the Mathematica Kernel and is used extensively in their own Notebook Frontends. The Mathematica Book insinuates that linking C programs with MathLink is straightforward but in…

Computational Physics · Physics 2015-05-28 T. Hahn

The R programming language is built on an ecosystem of packages, some that allow analysts to accomplish the same tasks. For example, there are at least two clear workflows for creating data visualizations in R: using the base graphics…

Other Statistics · Statistics 2019-03-06 Leslie Myint , Aboozar Hadavand , Leah Jager , Jeffrey Leek

RTNeural is a neural inferencing library written in C++. RTNeural is designed to be used in systems with hard real-time constraints, with additional emphasis on speed, flexibility, size, and convenience. The motivation and design of the…

Audio and Speech Processing · Electrical Eng. & Systems 2021-06-08 Jatin Chowdhury

People have shown that in-network computation (INC) significantly boosts performance in many application scenarios include distributed training, MapReduce, agreement, and network monitoring. However, existing INC programming is unfriendly…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-12-19 Bohan Zhao , Wenfei Wu , Wei Xu

R has become a cornerstone of scientific and statistical computing due to its extensive package ecosystem, expressive syntax, and strong support for reproducible analysis. However, as data sizes and computational demands grow, native R…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-05-13 Xiran Zhang , Javier Conejero , Sameh Abdulah , Jorge Ejarque , Ying Sun , Rosa M. Badia , David E. Keyes , Marc G. Genton

Braidlab is a Matlab package for analyzing data using braids. It was designed to be fast, so it can be used on relatively large problems. It uses the object-oriented features of Matlab to provide a class for braids on punctured disks and a…

Geometric Topology · Mathematics 2019-11-18 Jean-Luc Thiffeault , Marko Budisic
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