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Related papers: HUMAP: Hierarchical Uniform Manifold Approximation…

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Dimensionality Reduction (DR) is widely used for visualizing high-dimensional data, often with the goal of revealing expected cluster structure. However, such a structure may not always appear in the projections. Existing DR quality metrics…

Machine Learning · Computer Science 2025-09-05 Diede P. M. van der Hoorn , Alessio Arleo , Fernando V. Paulovich

Dimensionality reduction (DR) techniques map high-dimensional data into lower-dimensional spaces. Yet, current DR techniques are not designed to explore semantic structure that is not directly available in the form of variables or class…

Machine Learning · Computer Science 2025-06-19 Artur André Oliveira , Mateus Espadoto , Roberto Hirata , Roberto M. Cesar , Alex C. Telea

Uniform Manifold Approximation and Projection (UMAP) is one of the state-of-the-art methods for dimensionality reduction and data visualization. This is a tutorial and survey paper on UMAP and its variants. We start with UMAP algorithm…

Human-Computer Interaction · Computer Science 2021-09-07 Benyamin Ghojogh , Ali Ghodsi , Fakhri Karray , Mark Crowley

Dimension reduction and visualization of high-dimensional data have become very important research topics because of the rapid growth of large databases in data science. In this paper, we propose using a generalized sigmoid function to…

Machine Learning · Statistics 2020-07-20 Yu Liang , Arin Chaudhuri , Haoyu Wang

It has become standard to use gradient-based dimensionality reduction (DR) methods like tSNE and UMAP when explaining what AI models have learned. This makes sense: these methods are fast, robust, and have an uncanny ability to find…

Machine Learning · Computer Science 2024-06-17 Andrew Draganov , Simon Dohn

Selecting the appropriate dimensionality reduction (DR) technique and determining its optimal hyperparameter settings that maximize the accuracy of the output projections typically involves extensive trial and error, often resulting in…

Human-Computer Interaction · Computer Science 2026-01-13 Hyeon Jeon , Jeongin Park , Soohyun Lee , Dae Hyun Kim , Sungbok Shin , Jinwook Seo

We present a new nonlinear dimensionality reduction method, MAPLE, that enhances UMAP by improving manifold modeling. MAPLE employs a self-supervised learning approach to more efficiently encode low-dimensional manifold geometry. Central to…

Machine Learning · Computer Science 2026-05-15 Zeyang Huang , Takanori Fujiwara , Angelos Chatzimparmpas , Wandrille Duchemin , Andreas Kerren

Dimension reduction (DR) aims to learn low-dimensional representations of high-dimensional data with the preservation of essential information. In the context of manifold learning, we define that the representation after…

Machine Learning · Computer Science 2021-07-01 Siyuan Li , Haitao Lin , Zelin Zang , Lirong Wu , Jun Xia , Stan Z. Li

Dimensionality reduction (DR) on the manifold includes effective methods which project the data from an implicit relational space onto a vectorial space. Regardless of the achievements in this area, these algorithms suffer from the lack of…

Machine Learning · Computer Science 2019-09-23 Babak Hosseini , Barbara Hammer

Dimensionality reduction (DR) techniques have been consistently supporting high-dimensional data analysis in various applications. Besides the patterns uncovered by these techniques, the interpretation of DR results based on each feature's…

Machine Learning · Computer Science 2021-03-11 Wilson Estécio Marcílio Júnior , Danilo Medeiros Eler

In the vast landscape of visualization research, Dimensionality Reduction (DR) and graph analysis are two popular subfields, often essential to most visual data analytics setups. DR aims to create representations to support neighborhood and…

Machine Learning · Computer Science 2024-12-10 Fernando Paulovich , Alessio Arleo , Stef van den Elzen

We propose a new dimensionality reduction toolkit designed to address some of the challenges faced by traditional methods like UMAP and tSNE such as loss of global structure and computational efficiency. Built on the JAX framework, DiRe…

Machine Learning · Computer Science 2025-08-19 Alexander Kolpakov , Igor Rivin

Dimensionality reduction (DR) techniques are essential for visually analyzing high-dimensional data. However, visual analytics using DR often face unreliability, stemming from factors such as inherent distortions in DR projections. This…

Human-Computer Interaction · Computer Science 2025-03-04 Hyeon Jeon , Hyunwook Lee , Yun-Hsin Kuo , Taehyun Yang , Daniel Archambault , Sungahn Ko , Takanori Fujiwara , Kwan-Liu Ma , Jinwook Seo

Scientists in many fields have the common and basic need of dimensionality reduction: visualizing the underlying structure of the massive multivariate data in a low-dimensional space. However, many dimensionality reduction methods confront…

Machine Learning · Statistics 2015-03-19 Teng Qiu , Yongjie Li

Sharpened dimensionality reduction (SDR), which belongs to the class of multidimensional projection techniques, has recently been introduced to tackle the challenges in the exploratory and visual analysis of high-dimensional data. SDR has…

Computer Vision and Pattern Recognition · Computer Science 2022-02-24 Jeewon Heo , Youngjoo Kim , Jos B. T. M. Roerdink

Dimensionality Reduction (DR) scatterplot layouts have become a ubiquitous visualization tool for analyzing multidimensional datasets. Despite their popularity, such scatterplots suffer from occlusion, especially when informative glyphs are…

Computer Vision and Pattern Recognition · Computer Science 2023-10-12 Gladys M. Hilasaca , Wilson E. Marcílio-Jr , Danilo M. Eler , Rafael M. Martins , Fernando V. Paulovich

Evaluating the accuracy of dimensionality reduction (DR) projections in preserving the structure of high-dimensional data is crucial for reliable visual analytics. Diverse evaluation metrics targeting different structural characteristics…

Machine Learning · Computer Science 2026-01-13 Jiyeon Bae , Hyeon Jeon , Jinwook Seo

Dimensionality Reduction (DR) techniques are commonly used for the visual exploration and analysis of high-dimensional data due to their ability to project datasets of high-dimensional points onto the 2D plane. However, projecting datasets…

Machine Learning · Computer Science 2025-11-19 Jaume Ros , Alessio Arleo , Fernando Paulovich

Unsupervised learning aims to capture the underlying structure of potentially large and high-dimensional datasets. Traditionally, this involves using dimensionality reduction (DR) methods to project data onto lower-dimensional spaces or…

Machine Learning · Computer Science 2025-06-30 Hugues Van Assel , Cédric Vincent-Cuaz , Nicolas Courty , Rémi Flamary , Pascal Frossard , Titouan Vayer

High-dimensional data, characterized by many features, can be difficult to visualize effectively. Dimensionality reduction techniques, such as PCA, UMAP, and t-SNE, address this challenge by projecting the data into a lower-dimensional…