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A global optimization method called Greedy Neighborhood Search (GNS) and a novel conformational sampling method using a spherical distribution is proposed to find the minimum energy conformation of a protein-like heteropolymer model called…

Biological Physics · Physics 2016-12-06 Joon Suk Huh

This paper presents an adaptive amoeba algorithm to address the shortest path tree (SPT) problem in dynamic graphs. In dynamic graphs, the edge weight updates consists of three categories: edge weight increases, edge weight decreases, the…

Neural and Evolutionary Computing · Computer Science 2013-11-05 Xiaoge Zhang , Qi Liu , Yong Hu , Felix T. S. Chan , Sankaran Mahadevan , Zili Zhang , Yong Deng

We consider single-source shortest path algorithms that perform a sequence of relaxation steps whose ordering depends only on the input graph structure and not on its weights or the results of prior steps. Each step examines one edge of the…

Data Structures and Algorithms · Computer Science 2023-05-17 David Eppstein

Minimum energy path (MEP) search is a vital but often very time-consuming method to predict the transition states of versatile dynamic processes in chemistry, physics, and materials science. In this study, we reveal that the chemical bond…

Materials Science · Physics 2023-07-18 Hongsheng Cai , Guoyuan Liu , Peiqi Qiu , Guangfu Luo

The training of deep neural networks is inherently a nonconvex optimization problem, yet standard approaches such as stochastic gradient descent (SGD) require simultaneous updates to all parameters, often leading to unstable convergence and…

Machine Learning · Computer Science 2025-08-07 Chengcheng Yan , Jiawei Xu , Zheng Peng , Qingsong Wang

Accurately solving PDEs with localised features requires refined meshes that adapt to the solution. Traditional numerical methods, such as finite elements, are linear in nature and often ineffective for such problems, as the mesh is not…

Numerical Analysis · Mathematics 2025-08-27 Alexandre Magueresse , Santiago Badia

The task of finding the smallest energy needed to bring a solid to its onset of mechanical instability arises in many problems in materials science, from the determination of the elasticity limit to the consistent assignment of free…

Statistical Mechanics · Physics 2017-05-03 Axel van de Walle , Sara Kadkhodaei , Ruoshi Sun , Qi-Jun Hong

Reduced voltage operation is an effective technique for substantial energy efficiency improvement in digital circuits. This brief introduces a simple approach for enabling reduced voltage operation of Deep Neural Network (DNN) accelerators…

Hardware Architecture · Computer Science 2025-05-12 Mikael Rinkinen , Lauri Koskinen , Olli Silven , Mehdi Safarpour

We study the spontaneous out-of-plane bending of a planar untwisted ribbon composed of nematic polymer networks activated by a change in temperature. Our theory accounts for both stretching and bending energies, which compete to establish…

Soft Condensed Matter · Physics 2023-02-03 Harmeet Singh , Epifanio G. Virga

When equipped with efficient optimization algorithms, the over-parameterized neural networks have demonstrated high level of performance even though the loss function is non-convex and non-smooth. While many works have been focusing on…

Machine Learning · Computer Science 2021-03-11 Zhiqi Bu , Shiyun Xu , Kan Chen

The purpose of this work is to introduce and characterize the Bounded Acceleration Shortest Path (BASP) problem, a generalization of the Shortest Path (SP) problem. This problem is associated to a graph: the nodes represent positions of a…

Data Structures and Algorithms · Computer Science 2024-04-10 Stefano Ardizzoni , Luca Consolini , Mattia Laurini , Marco Locatelli

We propose an adaptive iteratively linearized finite element method (AILFEM) in the context of strongly monotone nonlinear operators in Hilbert spaces. The approach combines adaptive mesh-refinement with an energy-contractive linearization…

Numerical Analysis · Mathematics 2025-03-18 Ani Miraçi , Dirk Praetorius , Julian Streitberger

Finding optimal paths in connected graphs requires determining the smallest total cost for traveling along the graph's edges. This problem can be solved by several classical algorithms where, usually, costs are predefined for all edges.…

Machine Learning · Computer Science 2023-11-03 Tomas Kulvicius , Minija Tamosiunaite , Florentin Wörgötter

Maintaining and updating shortest paths information in a graph is a fundamental problem with many applications. As computations on dense graphs can be prohibitively expensive, and it is preferable to perform the computations on a sparse…

Data Structures and Algorithms · Computer Science 2021-09-21 Thiago Bergamaschi , Monika Henzinger , Maximilian Probst Gutenberg , Virginia Vassilevska Williams , Nicole Wein

Neural network training is commonly accelerated by using multiple synchronized workers to compute gradient updates in parallel. Asynchronous methods remove synchronization overheads and improve hardware utilization at the cost of…

Machine Learning · Computer Science 2020-07-13 Abhinav Venigalla , Atli Kosson , Vitaliy Chiley , Urs Köster

We consider a mixed formulation of parametrized elasticity problems in terms of stress, displacement, and rotation. The latter two variables act as Lagrange multipliers to enforce conservation of linear and angular momentum. Due to the…

Numerical Analysis · Mathematics 2024-10-10 Wietse M. Boon , Nicola R. Franco , Alessio Fumagalli

The minimum action method (MAM) is to calculate the most probable transition path in randomly perturbed stochastic dynamics, based on the idea of action minimization in the path space. The accuracy of the numerical path between different…

Computational Physics · Physics 2017-05-26 Y Sun , X Zhou

We propose a continuous-time scheme for large-scale optimization that introduces individual, adaptive momentum coefficients regulated by the kinetic energy of each model parameter. This approach automatically adjusts to local landscape…

Machine Learning · Computer Science 2026-02-03 Aikaterini Karoni , Rajit Rajpal , Benedict Leimkuhler , Gabriel Stoltz

Combined optimization problems that couple data-fidelity and regularization terms arise naturally in a wide range of inverse problems. In this paper, we study an adaptive randomized averaging block extended Bregman-Kaczmarz (aRABEBK) method…

Numerical Analysis · Mathematics 2026-01-19 Zeyu Dong , Aqin Xiao , Guojian Yin , Junfeng Yin

Designing an optimal deep neural network for a given task is important and challenging in many machine learning applications. To address this issue, we introduce a self-adaptive algorithm: the adaptive network enhancement (ANE) method,…

Numerical Analysis · Mathematics 2022-03-02 Zhiqiang Cai , Jingshuang Chen , Min Liu