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Neighbour embeddings (NE) allow the representation of high dimensional datasets into lower dimensional spaces and are often used in data visualisation. In practice, accelerated approximations are employed to handle very large datasets.…

Machine Learning · Computer Science 2025-09-10 Pierre Lambert , Edouard Couplet , Michel Verleysen , John Aldo Lee

We propose a novel algorithm for solving non-convex, nonlinear equality-constrained finite-sum optimization problems. The proposed algorithm incorporates an additional sampling strategy for sample size update into the well-known framework…

Optimization and Control · Mathematics 2025-08-05 Nataša Krejić , Nataša Krklec Jerinkić , Tijana Ostojić , Nemanja Vučićević

Efforts to modulate the electronic properties of atomically thin crystalline nanoribbons requires precise control over their morphology. Here, we perform atomistic simulations on freestanding graphene nanoribbons (GNRs) to first identify…

Mesoscale and Nanoscale Physics · Physics 2011-07-21 Hailong Wang , Moneesh Upmanyu

Optimization of atomic structures presents a challenging problem, due to their highly rough and non-convex energy landscape, with wide applications in the fields of drug design, materials discovery, and mechanics. Here, we present a graph…

Machine Learning · Computer Science 2023-06-21 Vaibhav Bihani , Sahil Manchanda , Srikanth Sastry , Sayan Ranu , N. M. Anoop Krishnan

We introduce a machine learning method in which energy solutions from the Schrodinger equation are predicted using symmetry adapted atomic orbitals features and a graph neural-network architecture. \textsc{OrbNet} is shown to outperform…

We study the error in approximating the minimum of a Brownian motion on the unit interval based on finitely many point evaluations. We construct an algorithm that adaptively chooses the points at which to evaluate the Brownian path. In…

Probability · Mathematics 2016-01-07 James M. Calvin , Mario Hefter , André Herzwurm

We investigate electronic transport in lithographically patterned graphene ribbon structures where the lateral confinement of charge carriers creates an energy gap near the charge neutrality point. Individual graphene layers are contacted…

Mesoscale and Nanoscale Physics · Physics 2009-11-13 Melinda Y. Han , Barbaros Oezyilmaz , Yuanbo Zhang , Philip Kim

The Bellman-Ford algorithm for single-source shortest paths repeatedly updates tentative distances in an operation called relaxing an edge. In several important applications a non-adaptive (oblivious) implementation is preferred, which…

Data Structures and Algorithms · Computer Science 2025-02-04 Jialu Hu , László Kozma

Quantum annealing is a promising approach for solving combinatorial optimization problems. However, its performance is often limited by the overhead of additional qubits required for embedding logical QUBO models onto quantum annealers.…

Quantum Physics · Physics 2026-01-27 Kohei Suda , Soshun Naito , Yoshihiko Hasegawa

We propose an efficient residual minimization technique for the nonlinear model-order reduction of parameterized hyperbolic partial differential equations. Our nonlinear approximation space is a span of snapshots evaluated on a shifted…

Numerical Analysis · Mathematics 2021-01-21 Neeraj Sarna , Sara Grundel

Given a 2-edge connected, unweighted, and undirected graph $G$ with $n$ vertices and $m$ edges, a $\sigma$-tree spanner is a spanning tree $T$ of $G$ in which the ratio between the distance in $T$ of any pair of vertices and the…

Data Structures and Algorithms · Computer Science 2018-10-03 Davide Bilò , Kleitos Papadopoulos

Reconstruction of the network interaction structure from multivariate time series is an important problem in multiple fields of science. This problem is ill-posed for large networks leading to the reconstruction of false interactions. We…

Data Analysis, Statistics and Probability · Physics 2025-11-18 Tiago Pereira , Edmilson Roque dos Santos , Sebastian van Strien

Recognizing implicit visual and textual patterns is essential in many real-world applications of modern AI. However, tackling long-tail pattern recognition tasks remains challenging for current pre-trained foundation models such as LLMs and…

Computer Vision and Pattern Recognition · Computer Science 2026-03-03 Minxue Tang , Yangyang Yu , Aolin Ding , Maziyar Baran Pouyan , Taha Belkhouja , Yujia Bao

In this paper, we study the problem of finding a minimum weight spanning tree that contains each vertex in a given subset $V_{\rm NT}$ of vertices as an internal vertex. This problem, called Minimum Weight Non-Terminal Spanning Tree,…

Data Structures and Algorithms · Computer Science 2025-01-30 Tesshu Hanaka , Yasuaki Kobayashi

This paper outlines an energy-minimization finite-element approach to the modeling of equilibrium configurations for nematic liquid crystals in the presence of internal and external electric fields. The method targets minimization of system…

Computational Physics · Physics 2014-07-14 J. H. Adler , T. J. Atherton , T. R. Benson , D. B. Emerson , S. P. MacLachlan

We present a method for solving the transshipment problem - also known as uncapacitated minimum cost flow - up to a multiplicative error of $1 + \varepsilon$ in undirected graphs with non-negative edge weights using a tailored gradient…

Data Structures and Algorithms · Computer Science 2021-02-04 Ruben Becker , Sebastian Forster , Andreas Karrenbauer , Christoph Lenzen

Finding an effective and controllable way to create a sizable energy gap in graphene-based systems has been a challenging topic of intensive research. We propose that the hybrid of boron nitride and graphene (h-BNC) at low BN doping serves…

Mesoscale and Nanoscale Physics · Physics 2023-12-01 Chih-Piao Chuu , Wei-En Tseng , Kuan-Hung Liu , Ching-Ming Wei , Mei-Yin Chou

We present a class of simple algorithms that allows to find the reaction path in systems with a complex potential energy landscape. The approach does not need any knowledge on the product state and does not require the calculation of any…

Disordered Systems and Neural Networks · Physics 2018-02-28 Silvia Bonfanti , Walter Kob

We present an $O(nm)$ algorithm for all-pairs shortest paths computations in a directed graph with $n$ nodes, $m$ arcs, and nonnegative integer arc costs. This matches the complexity bound attained by Thorup \cite{Thorup1999} for the…

Data Structures and Algorithms · Computer Science 2022-12-02 James B. Orlin , László A. Végh

Most existing random walk based network embedding methods often follow only one of two principles, homophily or structural equivalence. In real world networks, however, nodes exhibit a mixture of homophily and structural equivalence, which…

Social and Information Networks · Computer Science 2020-10-27 Chen Cui , Ning Yang , Philip S. Yu
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