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This article introduces the R package hermiter which facilitates estimation of univariate and bivariate probability density functions and cumulative distribution functions along with full quantile functions (univariate) and nonparametric…

Computation · Statistics 2023-07-04 Michael Stephanou , Melvin Varughese

It is desirable for statistical models to detect signals of interest independently of their position. If the data is generated by some smooth process, this additional structure should be taken into account. We introduce a new class of…

Machine Learning · Computer Science 2023-08-11 Florian Heinrichs , Mavin Heim , Corinna Weber

Exponential random graph models (ERGMs), also known as p* models, have been utilized extensively in the social science literature to study complex networks and how their global structure depends on underlying structural components. However,…

Applications · Statistics 2015-05-19 Sean L. Simpson , Satoru Hayasaka , Paul J. Laurienti

BHAM is a freely avaible R pakcage that implments Bayesian hierarchical additive models for high-dimensional clinical and genomic data. The package includes functions that generalized additive model, and Cox additive model with the…

Computation · Statistics 2022-07-07 Boyi Guo , Nengjun Yi

RSNet is an open-source R package that provides a resampling-based framework for robust and interpretable network inference, designed to address the limited-sample-size challenges common in high-dimensional data. It supports both the…

Machine Learning · Computer Science 2026-05-14 Ziwei Huang , Zeyuan Song , Paola Sebastiani , Stefano Monti

Graphs are essential representations of many real-world data such as social networks. Recent years have witnessed the increasing efforts made to extend the neural network models to graph-structured data. These methods, which are usually…

Machine Learning · Computer Science 2018-11-07 Yao Ma , Ziyi Guo , Zhaochun Ren , Eric Zhao , Jiliang Tang , Dawei Yin

With the emerging of new networks, such as wireless sensor networks, vehicle networks, P2P networks, cloud computing, mobile Internet, or social networks, the network dynamics and complexity expands from system design, hardware, software,…

Social and Information Networks · Computer Science 2013-05-07 Jianguo Ding , Pascal Bouvry

In this chapter we review some of the most recent computational advances in the rapidly expanding field of statistical social network analysis using the R open-source software. In particular we will focus on Bayesian estimation for two…

Computation · Statistics 2015-04-14 Alberto Caimo , Isabella Gollini

Dream narratives provide a unique window into human cognition and emotion, yet their systematic analysis using artificial intelligence has been underexplored. We introduce DreamNet, a novel deep learning framework that decodes semantic…

Machine Learning · Computer Science 2025-03-11 Tapasvi Panchagnula

robustloggamma is an R package for robust estimation and inference in the generalized loggamma model. We briefly introduce the model, the estimation procedures and the computational algorithms. Then, we illustrate the use of the package…

Computation · Statistics 2015-12-08 Claudio Agostinelli , Alfio Marazzi , Victor J. Yohai , Alex Randriamiharisoa

A new modelling approach for the analysis of weighted networks with ordinal/polytomous dyadic values is introduced. Specifically, it is proposed to model the weighted network connectivity structure using a hierarchical multilayer…

Methodology · Statistics 2019-08-05 Alberto Caimo , Isabella Gollini

For any forecasting application, evaluation of forecasts is an important task. For example, in the field of renewable energy sources there is high variability and uncertainty of power production, which makes forecasting and the evaluation…

In order to achieve high data rate and ubiquitous connectivity in future wireless networks, a key task is to efficiently manage the radio resource by judicious beamforming and power allocation. Unfortunately, the iterative nature of the…

Networking and Internet Architecture · Computer Science 2023-01-03 Yunqi Wang , Yang Li , Qingjiang Shi , Yik-Chung Wu

The rise of the programmable web offers new opportunities for the empirically driven social sciences. The access, compilation and preparation of data from the programmable web for statistical analysis can, however, involve substantial…

Computation · Statistics 2016-07-20 Ulrich Matter

Edge features contain important information about graphs. However, current state-of-the-art neural network models designed for graph learning, e.g. graph convolutional networks (GCN) and graph attention networks (GAT), adequately utilize…

Machine Learning · Computer Science 2019-01-29 Liyu Gong , Qiang Cheng

We study the family of network models derived by requiring the expected properties of a graph ensemble to match a given set of measurements of a real-world network, while maximizing the entropy of the ensemble. Models of this type play the…

Statistical Mechanics · Physics 2009-11-10 Juyong Park , M. E. J. Newman

In applications such as social, energy, transportation, sensor, and neuronal networks, high-dimensional data naturally reside on the vertices of weighted graphs. The emerging field of signal processing on graphs merges algebraic and…

Discrete Mathematics · Computer Science 2015-06-12 David I Shuman , Sunil K. Narang , Pascal Frossard , Antonio Ortega , Pierre Vandergheynst

BioNetGen is an open-source software package for rule-based modeling of complex biochemical systems. Version 2.2 of the software introduces numerous new features for both model specification and simulation. Here, we report on these…

This article describes SimEngine, an open-source R package for structuring, maintaining, running, and debugging statistical simulations on both local and cluster-based computing environments. Several R packages exist for structuring…

Computation · Statistics 2025-09-25 Avi Kenny , Charles J. Wolock

Link prediction attempts to predict whether an unseen edge exists based on only a portion of edges of a graph. A flurry of methods have been introduced in recent years that attempt to make use of graph neural networks (GNNs) for this task.…

Machine Learning · Computer Science 2023-11-21 Juanhui Li , Harry Shomer , Haitao Mao , Shenglai Zeng , Yao Ma , Neil Shah , Jiliang Tang , Dawei Yin