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Related papers: Self-Improved Retrosynthetic Planning

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This paper is concerned with programming adaptive linear neural networks (ALNNs) using chemical reaction networks (CRNs) equipped with mass-action kinetics. Through individually programming the forward propagation and the backpropagation of…

Dynamical Systems · Mathematics 2022-04-14 Yuzhen Fan , Xiaoyu Zhang , Chuanhou Gao

Generative Flow Networks (GFlowNets or GFNs) are probabilistic models predicated on Markov flows, and they employ specific amortization algorithms to learn stochastic policies that generate compositional substances including biomolecules,…

Machine Learning · Computer Science 2025-03-21 Shuai Guo , Jielei Chu , Lin Ma , Zhaoyu Li , Tianrui Li

Motivated by the gap between theoretical optimal approximation rates of deep neural networks (DNNs) and the accuracy realized in practice, we seek to improve the training of DNNs. The adoption of an adaptive basis viewpoint of DNNs leads to…

Machine Learning · Computer Science 2019-12-11 Eric C. Cyr , Mamikon A. Gulian , Ravi G. Patel , Mauro Perego , Nathaniel A. Trask

With the increasing amount of available data and advances in computing capabilities, deep neural networks (DNNs) have been successfully employed to solve challenging tasks in various areas, including healthcare, climate, and finance.…

Machine Learning · Computer Science 2023-01-12 Marcele O. K. Mendonça , Javier Maroto , Pascal Frossard , Paulo S. R. Diniz

Deep neural networks (DNNs) have been widely applied to solve real-world regression problems. However, selecting optimal network structures remains a significant challenge. This study addresses this issue by linking neuron selection in DNNs…

Computation · Statistics 2025-09-30 Noah Yi-Ting Hung , Li-Hsiang Lin , Vince D. Calhoun

In an ever expanding set of research and application areas, deep neural networks (DNNs) set the bar for algorithm performance. However, depending upon additional constraints such as processing power and execution time limits, or…

Machine Learning · Computer Science 2021-06-22 Nathan Dahlin , Krishna Chaitanya Kalagarla , Nikhil Naik , Rahul Jain , Pierluigi Nuzzo

Deep neural networks (DNN) have achieved unprecedented performance in computer-vision tasks almost ubiquitously in business, technology, and science. While substantial efforts are made to engineer highly accurate architectures and provide…

Image and Video Processing · Electrical Eng. & Systems 2022-09-08 Sumedha Singla

Chemical reaction prediction is pivotal for accelerating drug discovery and synthesis planning. Despite advances in data-driven models, current approaches are hindered by an overemphasis on parameter and dataset scaling. Some methods…

Machine Learning · Computer Science 2026-03-04 Ran Li , Shimin Di , Haowei LI , Luanshi Bu , Jiachuan Wang , Wangze Ni , Lei Chen

We present an attention-based Transformer model for automatic retrosynthesis route planning. Our approach starts from reactants prediction of single-step organic reactions for given products, followed by Monte Carlo tree search-based…

Quantitative Methods · Quantitative Biology 2019-06-07 Kangjie Lin , Youjun Xu , Jianfeng Pei , Luhua Lai

Chemical reactions occur in energy, environmental, biological, and many other natural systems, and the inference of the reaction networks is essential to understand and design the chemical processes in engineering and life sciences. Yet,…

Molecular Networks · Quantitative Biology 2021-01-22 Weiqi Ji , Sili Deng

Deep neural networks (DNNs) have been deployed in myriad machine learning applications. However, advances in their accuracy are often achieved with increasingly complex and deep network architectures. These large, deep models are often…

Machine Learning · Computer Science 2020-04-22 Wenhan Xia , Hongxu Yin , Niraj K. Jha

Motivated by the advances in 3D sensing technology and the spreading of low-cost robotic platforms, 3D object reconstruction has become a common task in many areas. Nevertheless, the selection of the optimal sensor pose that maximizes the…

Computer Vision and Pattern Recognition · Computer Science 2021-01-27 Miguel Mendoza , J. Irving Vasquez-Gomez , Hind Taud , Luis Enrique Sucar , Carolina Reta

Downward continuation is a critical task in potential field processing, including gravity and magnetic fields, which aims to transfer data from one observation surface to another that is closer to the source of the field. Its effectiveness…

Geophysics · Physics 2025-02-11 Jing Sun , Lu Li , Liang Zhang

Backdoor attacks have been one of the emerging security threats to deep neural networks (DNNs), leading to serious consequences. One of the mainstream backdoor defenses is model reconstruction-based. Such defenses adopt model unlearning or…

Artificial Intelligence · Computer Science 2024-03-06 Yufei Zhao , Dingji Wang , Bihuan Chen , Ziqian Chen , Xin Peng

Predicting reactants from a specified core product stands as a fundamental challenge within organic synthesis, termed retrosynthesis prediction. Recently, semi-template-based methods and graph-edits-based methods have achieved good…

Quantitative Methods · Quantitative Biology 2024-02-13 Zixun Lan , Binjie Hong , Jiajun Zhu , Zuo Zeng , Zhenfu Liu , Limin Yu , Fei Ma

Retrosynthesis prediction focuses on identifying reactants capable of synthesizing a target product. Typically, the retrosynthesis prediction involves two phases: Reaction Center Identification and Reactant Generation. However, we argue…

Artificial Intelligence · Computer Science 2025-01-15 Shengyin Sun , Wenhao Yu , Yuxiang Ren , Weitao Du , Liwei Liu , Xuecang Zhang , Ying Hu , Chen Ma

Traditional computer-aided synthesis planning (CASP) methods rely on iterative single-step predictions, leading to exponential search space growth that limits efficiency and scalability. We introduce a series of transformer-based models,…

Machine Learning · Computer Science 2025-04-09 Yu Shee , Anton Morgunov , Haote Li , Victor S. Batista

We introduce a deep learning (DL) framework for inverse problems in imaging, and demonstrate the advantages and applicability of this approach in passive synthetic aperture radar (SAR) image reconstruction. We interpret image recon-…

Computer Vision and Pattern Recognition · Computer Science 2018-03-14 Bariscan Yonel , Eric Mason , Birsen Yazıcı

Deep generative models are able to suggest new organic molecules by generating strings, trees, and graphs representing their structure. While such models allow one to generate molecules with desirable properties, they give no guarantees…

Machine Learning · Computer Science 2019-12-05 John Bradshaw , Brooks Paige , Matt J. Kusner , Marwin H. S. Segler , José Miguel Hernández-Lobato

Deep neural networks (DNNs) have successfully been applied in many fields in the past decades. However, the increasing number of multiply-and-accumulate (MAC) operations in DNNs prevents their application in resource-constrained and…

Machine Learning · Computer Science 2022-11-29 Wenhao Sun , Grace Li Zhang , Xunzhao Yin , Cheng Zhuo , Huaxi Gu , Bing Li , Ulf Schlichtmann
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