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Related papers: Self-Improved Retrosynthetic Planning

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Retrosynthesis prediction is one of the fundamental challenges in organic chemistry and related fields. The goal is to find reactants molecules that can synthesize product molecules. To solve this task, we propose a new graph-to-graph…

Quantitative Methods · Quantitative Biology 2022-04-20 Zaiyun Lin , Shiqiu Yin , Lei Shi , Wenbiao Zhou , YingSheng Zhang

Deep Neural Networks (DNNs) have become increasingly popular in computer vision, natural language processing, and other areas. However, training and fine-tuning a deep learning model is computationally intensive and time-consuming. We…

Machine Learning · Computer Science 2018-07-04 Jiayi Liu , Samarth Tripathi , Unmesh Kurup , Mohak Shah

Deep neural networks (DNNs) have been found to be vulnerable to backdoor attacks, raising security concerns about their deployment in mission-critical applications. While existing defense methods have demonstrated promising results, it is…

Machine Learning · Computer Science 2023-12-11 Yige Li , Xixiang Lyu , Xingjun Ma , Nodens Koren , Lingjuan Lyu , Bo Li , Yu-Gang Jiang

Deep neural networks (DNNs) achieve state-of-the-art performance in many areas, including computer vision, system configuration, and question-answering. However, DNNs are expensive to develop, both in intellectual effort (e.g., devising new…

Software Engineering · Computer Science 2024-04-26 James C. Davis , Purvish Jajal , Wenxin Jiang , Taylor R. Schorlemmer , Nicholas Synovic , George K. Thiruvathukal

Recent advances in machine learning (ML) have expedited retrosynthesis research by assisting chemists to design experiments more efficiently. However, all ML-based methods consume substantial amounts of paired training data (i.e., chemical…

Machine Learning · Computer Science 2024-02-02 Xu Zhang , Yiming Mo , Wenguan Wang , Yi Yang

With the improvement of the pattern recognition and feature extraction of Deep Neural Networks (DPNNs), image-based design and optimization have been widely used in multidisciplinary researches. Recently, a Reconstructive Neural Network…

Other Computer Science · Computer Science 2019-06-04 Yu Li , Hu Wang , Wenquan Shuai , Honghao Zhang , Yong Peng

Retrosynthesis poses a key challenge in biopharmaceuticals, aiding chemists in finding appropriate reactant molecules for given product molecules. With reactants and products represented as 2D graphs, retrosynthesis constitutes a…

Machine Learning · Computer Science 2025-07-22 Yiming Wang , Yuxuan Song , Yiqun Wang , Minkai Xu , Rui Wang , Hao Zhou , Wei-Ying Ma

Large language models (LLM) have achieved impressive progress across a broad range of general-purpose tasks, but their effectiveness in chemistry remains limited due to scarce domain-specific datasets and the demand for precise symbolic and…

Retrosynthesis is a major task for drug discovery. It is formulated as a graph-generating problem by many existing approaches. Specifically, these methods firstly identify the reaction center, and break target molecule accordingly to…

Machine Learning · Computer Science 2022-09-28 Jiahan Liu , Chaochao Yan , Yang Yu , Chan Lu , Junzhou Huang , Le Ou-Yang , Peilin Zhao

Deep Neural Networks (DNNs) are everywhere, frequently performing a fairly complex task that used to be unimaginable for machines to carry out. In doing so, they do a lot of decision making which, depending on the application, may be…

Machine Learning · Computer Science 2022-11-17 Avriti Chauhan , Mohammad Afzal , Hrishikesh Karmarkar , Yizhak Elboher , Kumar Madhukar , Guy Katz

We propose a new approach for large-scale high-dynamic range computational imaging. Deep Neural Networks (DNNs) trained end-to-end can solve linear inverse imaging problems almost instantaneously. While unfolded architectures provide…

Instrumentation and Methods for Astrophysics · Physics 2023-09-28 Amir Aghabiglou , Matthieu Terris , Adrian Jackson , Yves Wiaux

Neural networks have long strived to emulate the learning capabilities of the human brain. While deep neural networks (DNNs) draw inspiration from the brain in neuron design, their training methods diverge from biological foundations.…

Neural and Evolutionary Computing · Computer Science 2026-02-24 Joseph Bingham , Saman Zonouz , Dvir Aran

Deep neural networks (DNNs) have been used to create models for many complex analysis problems like image recognition and medical diagnosis. DNNs are a popular tool within machine learning due to their ability to model complex patterns and…

Machine Learning · Computer Science 2024-05-14 Parth Patil , Ben Boardley , Jack Gardner , Emily Loiselle , Deerajkumar Parthipan

Despite the efficacy on a variety of computer vision tasks, deep neural networks (DNNs) are vulnerable to adversarial attacks, limiting their applications in security-critical systems. Recent works have shown the possibility of generating…

Computer Vision and Pattern Recognition · Computer Science 2018-12-21 Ziang Yan , Yiwen Guo , Changshui Zhang

We propose a new model for making generalizable and diverse retrosynthetic reaction predictions. Given a target compound, the task is to predict the likely chemical reactants to produce the target. This generative task can be framed as a…

Machine Learning · Computer Science 2019-10-23 Benson Chen , Tianxiao Shen , Tommi S. Jaakkola , Regina Barzilay

As Deep Neural Networks (DNNs) are rapidly being adopted within large software systems, software developers are increasingly required to design, train, and deploy such models into the systems they develop. Consequently, testing and…

Software Engineering · Computer Science 2023-01-30 Jinhan Kim , Nargiz Humbatova , Gunel Jahangirova , Paolo Tonella , Shin Yoo

Learning models that execute algorithms can enable us to address a key problem in deep learning: generalizing to out-of-distribution data. However, neural networks are currently unable to execute recursive algorithms because they do not…

Machine Learning · Computer Science 2023-11-22 Jonas Jürß , Dulhan Jayalath , Petar Veličković

We introduce MHNpath, a machine learning-driven retrosynthetic tool designed for computer-aided synthesis planning. Leveraging modern Hopfield networks and novel comparative metrics, MHNpath efficiently prioritizes reaction templates,…

Computational Engineering, Finance, and Science · Computer Science 2025-12-18 Shivesh Prakash , Nandan Patel , Hans-Arno Jacobsen , Viki Kumar Prasad

Retrosynthesis prediction is one of the fundamental challenges in organic synthesis. The task is to predict the reactants given a core product. With the advancement of machine learning, computer-aided synthesis planning has gained…

Chemical Physics · Physics 2022-02-01 Yue Wan , Benben Liao , Chang-Yu Hsieh , Shengyu Zhang

Recently, deep neural networks (DNNs) have shown advantages in accelerating optimization algorithms. One approach is to unfold finite number of iterations of conventional optimization algorithms and to learn parameters in the algorithms.…

Machine Learning · Computer Science 2021-04-23 Byung Hyun Lee , Se Young Chun