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The brain is an intricately structured organ responsible for the rich emergent dynamics that support the complex cognitive functions we enjoy as humans. With around $10^{11}$ neurons and $10^{15}$ synapses, understanding how the human brain…

Neurons and Cognition · Quantitative Biology 2019-02-12 Jason Z. Kim , Danielle S. Bassett

Peristalsis by actively generated waves of muscle contraction is one of the most fundamental ways of producing motion in living systems. We show that peristalsis can be modeled by a train of rectangular-shaped solitary waves of localized…

Biological Physics · Physics 2021-04-21 Nikolai Gorbushin , Lev Truskinovsky

The mechanics of cells is strongly affected by molecular motors that generate forces in the cellular cytoskeleton. We develop a model for cytoskeletal networks driven out of equilibrium by molecular motors exerting transient contractile…

Soft Condensed Matter · Physics 2009-11-13 Fred C. MacKintosh , Alex J. Levine

Soliton in the hostile turbulent wave dark matter ($\Psi$DM) halo of a galaxy agitates with various kinds of excitation, and the soliton even breathes heavily under great stress. A theory of collective excitation for a $\Psi$DM soliton is…

Astrophysics of Galaxies · Physics 2023-03-17 Tzihong Chiueh , Yi-Hsiung Hsu

Molecular wires (MW) are the fundamental building blocks for molecular electronic devices. They consist of a molecular unit connected to two continuum reservoirs of electrons (usually metallic leads). We rely on Landauer theory as the basis…

Mesoscale and Nanoscale Physics · Physics 2009-10-31 Eldon Emberly , George Kirczenow

We prove a principle of linearized stability for traveling wave solutions to neural field equations posed on the real line. Additionally, we provide the existence of a finite dimensional invariant center manifold close to a traveling wave,…

Dynamical Systems · Mathematics 2024-12-06 Safaa Habib , Romain Veltz

We demonstrate a universal mechanism for terminating spiral waves in excitable media using an established topological framework. This mechanism dictates whether high- or low-energy defibrillation shocks succeed or fail. Furthermore, this…

Biological Physics · Physics 2022-07-13 Noah DeTal , Abouzar Kaboudian , Flavio Fenton

Stylized models of the neurodynamics that underpin sensory motor control in animals are proposed and studied. The voluntary motions of animals are typically initiated by high level intentions created in the primary cortex through a…

Systems and Control · Electrical Eng. & Systems 2021-10-12 John Baillieul , Zexin Sun

We propose a mechanism for mechanical regulation at the membrane of living cells, based on the exchange of membrane area between the cell membrane and a membrane reservoir. The reservoir is composed of invaginated membrane microdomains…

Subcellular Processes · Quantitative Biology 2007-05-23 Pierre Sens , Matthew S. Turner

We develop a nonlinear theory of soliton-induced waveguides that describes a finite-amplitude probe beam guided by a spatial dark soliton in a saturable nonlinear medium. We suggest an effective way to control the interaction of these…

patt-sol · Physics 2009-10-31 Elena A. Ostrovskaya , Yuri S. Kivshar

It is shown that matter solitons can be effectively managed by means of smooth variations of parameters of optical lattices in which the condensate is loaded. The phenomenon is based on the effect of lattice modulations on the carrier wave…

Soft Condensed Matter · Physics 2009-11-10 V. A. Brazhnyi , V. V. Konotop , V. Kuzmiak

We study wave propagation in networks of coupled cells which can behave as excitable or self-oscillatory media. For excitable media, an asymptotic construction of wave trains is presented. This construction predicts their shape and speed,…

Other Condensed Matter · Physics 2009-11-11 A. Carpio

The instability and nonlinear evolution of directional ocean waves is investigated numerically by means of simulations of the governing kinetic equation for narrow-band surface waves. Our simulation results reveal the onset of the…

Fluid Dynamics · Physics 2015-05-14 Bengt Eliasson , Padma K. Shukla

The control of wave propagation, particularly the quest for unidirectional transport, plays an important role in photonics and metamaterial science. While nonreciprocity is known to enable unidirectional amplification and stabilize complex…

Pattern Formation and Solitons · Physics 2025-12-10 Wen-Rong Sun , Jesús Cuevas Maraver

Despite decades of research, the modeling of moving contact lines has remained a formidable challenge in fluid dynamics whose resolution will impact numerous industrial, biological, and daily life applications. On the one hand, molecular…

Soft Condensed Matter · Physics 2018-11-09 E. R. Smith , P. E. Theodorakis , R. V. Craster , O. K. Matar

We investigate the dynamics of stage II retinal waves via a dynamical system, grounded on biophysics, and analysed with bifurcation theory. We show how the nonlinear cells coupling and bifurcation structure explain how waves start,…

Adaptation and Self-Organizing Systems · Physics 2023-08-25 Bruno Cessac , Dora Matzakou-Karvouniari

Circadian rhythms are archetypical examples of nonlinear oscillations. While these oscillations are usually attributed to circuits of biochemical interactions among clock genes and proteins, recent experimental studies reveal that they are…

Cell Behavior · Quantitative Biology 2023-06-27 Keith E. Kennedy , Juan F. Abenza , Leone Rossetti , Xavier Trepat , Pablo Villoslada , Jordi Garcia-Ojalvo

Tissue homeostasis, the biological process of maintaining a steady state in tissue via control of cell proliferation, death, and metabolic function, is essential for the development, growth, maintenance, and proper function of living…

Biological Physics · Physics 2025-01-15 KVS Chaithanya , Jan Rozman , Andrej Košmrlj , Rastko Sknepnek

The cytoskeleton provides eukaryotic cells with mechanical support and helps them perform their biological functions. It is a network of semiflexible polar protein filaments and many accessory proteins that bind to these filaments, regulate…

Cell Behavior · Quantitative Biology 2008-01-01 Tanniemola B. Liverpool , M. Cristina Marchetti

Mechanical oscillations are important for many cellular processes, e.g. the beating of cilia and flagella or the sensation of sound by hair cells. These dynamic states originate from spontaneous oscillations of molecular motors. A…

Biological Physics · Physics 2009-01-29 Stefan Gunther , Karsten Kruse