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While deep learning has seen many recent applications to drug discovery, most have focused on predicting activity or toxicity directly from chemical structure. Phenotypic changes exhibited in cellular images are also indications of the…

Computer Vision and Pattern Recognition · Computer Science 2019-03-18 Philip T. Jackson , Yinhai Wang , Sinead Knight , Hongming Chen , Thierry Dorval , Martin Brown , Claus Bendtsen , Boguslaw Obara

Neuroimaging data analysis often involves \emph{a-priori} selection of data features to study the underlying neural activity. Since this could lead to sub-optimal feature selection and thereby prevent the detection of subtle patterns in…

Neurons and Cognition · Quantitative Biology 2018-07-03 Arna Ghosh , Fabien dal Maso , Marc Roig , Georgios D Mitsis , Marie-Hélène Boudrias

Clustering is one of the fundamental tasks in computer vision and pattern recognition. Recently, deep clustering methods (algorithms based on deep learning) have attracted wide attention with their impressive performance. Most of these…

Computer Vision and Pattern Recognition · Computer Science 2021-06-14 Yanhai Gan , Xinghui Dong , Huiyu Zhou , Feng Gao , Junyu Dong

In this paper, we introduce a novel and interpretable methodology to cluster subjects suffering from cancer, based on features extracted from their biopsies. Contrary to existing approaches, we propose here to capture complex patterns in…

Quantitative Methods · Quantitative Biology 2020-07-07 Yassine El Ouahidi , Matis Feller , Matthieu Talagas , Bastien Pasdeloup

In this paper, we present a deep extension of Sparse Subspace Clustering, termed Deep Sparse Subspace Clustering (DSSC). Regularized by the unit sphere distribution assumption for the learned deep features, DSSC can infer a new data…

Computer Vision and Pattern Recognition · Computer Science 2017-09-26 Xi Peng , Jiashi Feng , Shijie Xiao , Jiwen Lu , Zhang Yi , Shuicheng Yan

Face clustering can provide pseudo-labels to the massive unlabeled face data and improve the performance of different face recognition models. The existing clustering methods generally aggregate the features within subgraphs that are often…

Computer Vision and Pattern Recognition · Computer Science 2023-04-24 Yuan Cao , Di Jiang , Guanqun Hou , Fan Deng , Xinjia Chen , Qiang Yang

High-resolution full lung CT scans now enable the detailed segmentation of airway trees up to the 6th branching generation. The airway binary masks display very complex tree structures that may encode biological information relevant to…

Robust quantification of pulmonary emphysema on computed tomography (CT) remains challenging for large-scale research studies that involve scans from different scanner types and for translation to clinical scans. Existing studies have…

Computer Vision and Pattern Recognition · Computer Science 2024-03-07 Xuzhe Zhang , Elsa D. Angelini , Eric A. Hoffman , Karol E. Watson , Benjamin M. Smith , R. Graham Barr , Andrew F. Laine

In recent years, the research landscape of machine learning in medical imaging has changed drastically from supervised to semi-, weakly- or unsupervised methods. This is mainly due to the fact that ground-truth labels are time-consuming and…

Image and Video Processing · Electrical Eng. & Systems 2021-10-04 Turkay Kart , Wenjia Bai , Ben Glocker , Daniel Rueckert

Recently, bladder cancer has been significantly increased in terms of incidence and mortality. Currently, two subtypes are known based on tumour growth: non-muscle invasive (NMIBC) and muscle-invasive bladder cancer (MIBC). In this work, we…

Image and Video Processing · Electrical Eng. & Systems 2021-06-28 Gabriel García , Anna Esteve , Adrián Colomer , David Ramos , Valery Naranjo

In the light of the COVID-19 pandemic, deep learning methods have been widely investigated in detecting COVID-19 from chest X-rays. However, a more pragmatic approach to applying AI methods to a medical diagnosis is designing a framework…

Image and Video Processing · Electrical Eng. & Systems 2020-12-01 Sahithya Ravi , Samaneh Khoshrou , Mykola Pechenizkiy

Deep subspace clustering (DSC) networks based on self-expressive model learn representation matrix, often implemented in terms of fully connected network, in the embedded space. After the learning is finished, representation matrix is used…

Computer Vision and Pattern Recognition · Computer Science 2024-01-31 Lovro Sindičić , Ivica Kopriva

Deep subspace clustering has attracted increasing attention in recent years. Almost all the existing works are required to load the whole training data into one batch for learning the self-expressive coefficients in the framework of deep…

Machine Learning · Computer Science 2022-05-25 Yanming Li , Changsheng Li , Shiye Wang , Ye Yuan , Guoren Wang

This study focuses on the classification of cancerous and healthy slices from multimodal lung images. The data used in the research comprises Computed Tomography (CT) and Positron Emission Tomography (PET) images. The proposed strategy…

Image and Video Processing · Electrical Eng. & Systems 2025-02-04 Surochita Pal , Sushmita Mitra

Clustering artworks is difficult for several reasons. On the one hand, recognizing meaningful patterns based on domain knowledge and visual perception is extremely hard. On the other hand, applying traditional clustering and feature…

Computer Vision and Pattern Recognition · Computer Science 2022-08-18 Giovanna Castellano , Gennaro Vessio

This paper presents a novel unsupervised segmentation method for 3D medical images. Convolutional neural networks (CNNs) have brought significant advances in image segmentation. However, most of the recent methods rely on supervised…

Computer Vision and Pattern Recognition · Computer Science 2018-04-13 Takayasu Moriya , Holger R. Roth , Shota Nakamura , Hirohisa Oda , Kai Nagara , Masahiro Oda , Kensaku Mori

Finding a suitable density function is essential for density-based clustering algorithms such as DBSCAN and DPC. A naive density corresponding to the indicator function of a unit $d$-dimensional Euclidean ball is commonly used in these…

Machine Learning · Computer Science 2021-10-15 Chao Zheng , Yingjie Chen , Chong Chen , Jianqiang Huang , Xian-Sheng Hua

Spectral clustering is a popular clustering method. It first maps data into the spectral embedding space and then uses Kmeans to find clusters. However, the two decoupled steps prohibit joint optimization for the optimal solution. In…

Machine Learning · Computer Science 2024-12-17 Wengang Guo , Wei Ye

We propose the DPSM method, a density-based node clustering approach that automatically determines the number of clusters and can be applied in both data space and graph space. Unlike traditional density-based clustering methods, which…

Machine Learning · Computer Science 2024-11-05 Feiping Nie , Yitao Song , Jingjing Xue , Rong Wang , Xuelong Li

Most density-based clustering methods largely rely on how well the underlying density is estimated. However, density estimation itself is also a challenging problem, especially the determination of the kernel bandwidth. A large bandwidth…

Machine Learning · Statistics 2015-12-08 Teng Qiu , Yongjie Li