Related papers: Counting Lyndon Subsequences
An infinite word is an infinite Lyndon word if it is smaller, with respect to the lexicographic order, than all its proper suffixes, or equivalently if it has infinitely many finite Lyndon words as prefixes. A characterization of binary…
The study of strings is an important combinatorial field that precedes the digital computer. Strings can be very long, trillions of letters, so it is important to find compact representations. Here we first survey various forms of one…
We consider the Consensus Patterns problem, where, given a set of input strings, one is asked to extract a long-enough pattern which appears (with some errors) in all strings. We prove that this problem is W[1]-hard when parameterized by…
We study the cycle structure of words in several random permutations. We assume that the permutations are independent and that their distribution is conjugation invariant, with a good control on their short cycles. If, after successive…
Highly-repetitive collections of strings are increasingly being amassed by genome sequencing and genetic variation experiments, as well as by storing all versions of human-generated files, like webpages and source code. Existing indexes for…
Let $w$ be a finite word over the alphabet $\{0,1\}$. For any natural number $n$, let $s_w(n)$ denote the number of occurrence of $w$ in the binary expansion of $n$ as a scattered subsequence. We study the behavior of the partial sum…
Let $\epsilon\in \{-1,1\}$. A sequence of prime numbers $p_1, p_2, p_3, ...$, such that $p_i=2p_{i-1}+\epsilon$ for all $i$, is called a {\it Cunningham chain} of the first or second kind, depending on whether $\epsilon =1$ or -1…
It has been shown that there is a sequential embedding structure in a $w_N$\ string theory based on a linearized $W_N$\ algebra. The $w_N$\ string theory is obtained as a special realization of the $w_{N+1}$\ string. The $w_{\infty}$\…
A classical measure of string comparison is given by the longest common subsequence (LCS) problem on a pair of strings. We consider its generalisation, called the semi-local LCS problem, which arises naturally in many string-related…
Many problems in Computer Science can be abstracted to the following question: given a set of objects and rules respectively, which new objects can be produced? In the paper, we consider a succinct version of the question: given a set of…
We present an algorithm computing the longest periodic subsequence of a string of length $n$ in $O(n^7)$ time with $O(n^4)$ words of space. We obtain improvements when restricting the exponents or extending the search allowing the reported…
We examine the open problem of finding the shortest string that contains each of the n! permutations of n symbols as contiguous substrings (i.e., the shortest superpermutation on n symbols). It has been conjectured that the shortest…
We introduce a new class of straight-line programs (SLPs), named the Lyndon SLP, inspired by the Lyndon trees (Barcelo, 1990). Based on this SLP, we propose a self-index data structure of $O(g)$ words of space that can be built from a…
We review the status of low-scale string theories and large extra-dimensions. After an overview on different string realizations, we discuss some of the main important problems and we summarize present bounds on the size of possible…
We study sketching and streaming algorithms for the Longest Common Subsequence problem (LCS) on strings of small alphabet size $|\Sigma|$. For the problem of deciding whether the LCS of strings $x,y$ has length at least $L$, we obtain a…
This paper investigates the approximability of the Longest Common Subsequence (LCS) problem. The fastest algorithm for solving the LCS problem exactly runs in essentially quadratic time in the length of the input, and it is known that under…
We say that a string of length $d$ occurs, in a Bernoulli sequence, if a success is followed by exactly $(d-1)$ failures before the next success. The counts of such $d$-strings are of interest, and in specific independent Bernoulli…
Lyndon words are extensively studied in combinatorics on words -- they play a crucial role on upper bounding the number of runs a word can have [Bannai+, SIAM J. Comput.'17]. We can determine Lyndon words, factorize a word into Lyndon words…
The Longest Common Subsequence (LCS) Problem asks for the longest sequence of (non-contiguous) matches between two given strings of characters. Using extensive Monte Carlo simulations, we find a finite size scaling law of the form E(L)/N =C…
Enumerating characteristic substrings (e.g., maximal repeats, minimal unique substrings, and minimal absent words) in a given string has been an important research topic because there are a wide variety of applications in various areas such…