Related papers: Counting Lyndon Subsequences
A string attractor of a string $T[1..|T|]$ is a set of positions $\Gamma$ of $T$ such that any substring $w$ of $T$ has an occurrence that crosses a position in $\Gamma$, i.e., there is a position $i$ such that $w = T[i..i+|w|-1]$ and the…
The {\em longest common subsequence (LCS)} problem is a classic and well-studied problem in computer science. LCS is a central problem in stringology and finds broad applications in text compression, error-detecting codes and biological…
We say a string has a cadence if a certain character is repeated at regular intervals, possibly with intervening occurrences of that character. We call the cadence anchored if the first interval must be the same length as the others. We…
In this paper, we consider a generalized longest common subsequence problem with multiple substring exclusion constrains. For the two input sequences $X$ and $Y$ of lengths $n$ and $m$, and a set of $d$ constrains $P=\{P_1,...,P_d\}$ of…
In this paper we consider two problems concerning string factorisation. Specifically given a string $w$ and an integer $k$ find a factorisation of $w$ where each factor has length bounded by $k$ and has the minimum (the FmD problem) or the…
One cannot yet point to any firm string prediction. While many approximate string ground states are known with interesting properties, we do not have any argument that one or another describes what we observe around us, and for reasons…
For two strings u, v over some alphabet A, we investigate the problem of embedding u into w as a subsequence under the presence of generalised gap constraints. A generalised gap constraint is a triple (i, j, C_{i, j}), where 1 <= i < j <=…
Algorithms to find optimal alignments among strings, or to find a parsimonious summary of a collection of strings, are well studied in a variety of contexts, addressing a wide range of interesting applications. In this paper, we consider…
A square is a word of the form $xx$ for a non-empty word $x$. Brlek and Li [Comb. Theory, 2025] proved that the number of distinct squares in a word $w$ of length $n$ is at most $n - \sigma$, where $\sigma$ is the number of letters used in…
Frid, Puzynina and Zamboni (2013) defined the palindromic length of a finite word $w$ as the minimal number of palindromes whose concatenation is equal to $w$. For an infinite word $u$ we study $PL_{u}$, that is, the function that assigns…
This paper introduces a new family of reconstruction codes which is motivated by applications in DNA data storage and sequencing. In such applications, DNA strands are sequenced by reading some subset of their substrings. While previous…
One expects type II string theory to be the unique ultraviolet completion of maximal supergravity. Motivated by the recent computation of the unitary bound on the leading Wilson coefficient within the S-matrix bootstrap, we analyse the…
String matching is the problem of deciding whether a given $n$-bit string contains a given $k$-bit pattern. We study the complexity of this problem in three settings. Communication complexity. For small $k$, we provide near-optimal upper…
Motivated by computing duplication patterns in sequences, a new fundamental problem called the longest subsequence-repeated subsequence (LSRS) is proposed. Given a sequence $S$ of length $n$, a letter-repeated subsequence is a subsequence…
The Shortest Superstring Problem (SSP) consists, for a set of strings S = {s_1,...,s_n}, to find a minimum length string that contains all s_i, 1 <= i <= k, as substrings. This problem is proved to be NP-Complete and APX-hard. Guaranteed…
In a paper entitled Binary lambda calculus and combinatory logic, John Tromp presents a simple way of encoding lambda calculus terms as binary sequences. In what follows, we study the numbers of binary strings of a given size that represent…
We investigate the variance of the length of the longest common subsequences of two independent random words of size $n$, where the letters of one word are i.i.d. uniformly drawn from $\{\alpha_1, \alpha_2, \cdots, \alpha_m\}$, while the…
We consider sigma-words, which are words used by Evdokimov in the construction of the sigma-sequence. We then find the number of occurrences of certain patterns and subwords in these words.
The notion of string attractor has been introduced in [Kempa and Prezza, 2018] in the context of Data Compression and it represents a set of positions of a finite word in which all of its factors can be "attracted". The smallest size…
We investigate the longest common substring problem for encoded sequences and its asymptotic behaviour. The main result is a strong law of large numbers for a re-scaled version of this quantity, which presents an explicit relation with the…