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We present a software tool -- extended Dynamic Causal Modelling for Phase Coupling (eDCM PC) -- that is able to estimate effective connectivity between any kind of oscillating systems, e.g. distant brain regions, using the phase information…

Data Analysis, Statistics and Probability · Physics 2023-07-06 Azamat Yeldesbay , Silvia Daun

Diffusion models are a powerful tool for probabilistic forecasting, yet most applications in high-dimensional complex systems predict future states individually. This approach struggles to model complex temporal dependencies and fails to…

Machine Learning · Computer Science 2025-12-10 Salva Rühling Cachay , Miika Aittala , Karsten Kreis , Noah Brenowitz , Arash Vahdat , Morteza Mardani , Rose Yu

This paper delivers a software -- libEMM -- for 3D controlled-source electromagnetics (CSEM) modelling in fictitious wave domain, based on the newly developed high-order finite-difference time-domain (FDTD) method on non-uniform grid. The…

Geophysics · Physics 2023-05-03 Pengliang Yang

We present the basic idea, implementation, measured performance and performance model of FDPS (Framework for developing particle simulators). FDPS is an application-development framework which helps the researchers to develop particle-based…

Instrumentation and Methods for Astrophysics · Physics 2016-06-15 Masaki Iwasawa , Ataru Tanikawa , Natsuki Hosono , Keigo Nitadori , Takayuki Muranushi , Junichiro Makino

Recent advances in both theory and methods have created opportunities to simulate biomolecular processes more efficiently using adaptive ensemble simulations. Ensemble-based simulations are used widely to compute a number of individual…

Computational Engineering, Finance, and Science · Computer Science 2020-09-14 Vivek Balasubramanian , Travis Jensen , Matteo Turilli , Peter Kasson , Michael Shirts , Shantenu Jha

In the study of non-adiabatic chemical processes such as photocatalysis and photosynthesis, non-adiabatic molecular dynamics (NAMD) is an indispensable theoretical tool, which requires precise potential energy surfaces (PESs) of ground and…

Chemical Physics · Physics 2026-01-19 Tianyi Li , Yumeng Zeng , Qiming Ding , Zixuan Huo , Xiaosi Xu , Jiajun Ren , Diandong Tang , Xiaoxia Cai , Xiao Yuan

Conventional molecular dynamics (MD) simulations struggle when simulating particles with steeply varying interaction potentials, due to the need to use a very short time step. Here, we demonstrate that an event-driven Monte Carlo (EDMC)…

Soft Condensed Matter · Physics 2025-10-09 Antoine Castagnède , Laura Filion , Frank Smallenburg

A performant and easy-to-use event data model (EDM) is a key component of any HEP software stack. The podio EDM toolkit provides a user friendly way of generating such a performant implementation in C++ from a high level description in yaml…

Kernel density estimation (KDE) is one of the most widely used nonparametric density estimation methods. The fact that it is a memory-based method, i.e., it uses the entire training data set for prediction, makes it unsuitable for most…

Machine Learning · Computer Science 2022-08-08 Joseph A. Gallego , Juan F. Osorio , Fabio A. González

The nonlinear dynamics of energetic particle (EP) driven geodesic acoustic modes (EGAM) in tokamaks is investigated, and compared with the beam-plasma system (BPS). The EGAM is studied with the global gyrokinetic (GK) particle-in-cell code…

Plasma Physics · Physics 2019-01-16 A. Biancalani , N. Carlevaro , A. Bottino , G. Montani , Z. Qiu

We study spectral algorithms in the setting where kernels are learned from data. We introduce the effective span dimension (ESD), an alignment-sensitive complexity measure that depends jointly on the signal, spectrum, and noise level…

Machine Learning · Computer Science 2026-05-12 Dongming Huang , Zhifan Li , Yicheng Li , Qian Lin

Numerical solution of partial differential equations (PDEs) plays a vital role in various fields of science and engineering. In recent years, deep neural networks (DNNs) have emerged as a powerful tool for solving PDEs, leveraging their…

Numerical Analysis · Mathematics 2026-02-16 Shuo Ling , Wenjun Ying , Zhen Zhang

This paper presents a novel methodology for fast simulation and analysis of transient heat transfer. The proposed methodology is suitable for real-time applications owing to (i) establishing the solution method from the viewpoint of…

Computational Engineering, Finance, and Science · Computer Science 2021-12-30 Jinao Zhang , Sunita Chauhan

Expectation Propagation (EP)-based Multiple-Input Multiple-Output (MIMO) detector is regarded as a state-of-the-art MIMO detector because of its exceptional performance. However, we find that the EP MIMO detector cannot guarantee to achieve…

Signal Processing · Electrical Eng. & Systems 2020-10-21 Hang Chen , Guoqiang Yao , Jianhao Hu

For nonlinear (control) systems, extended dynamic mode decomposition (EDMD) is a popular method to obtain data-driven surrogate models. Its theoretical foundation is the Koopman framework, in which one propagates observable functions of the…

Optimization and Control · Mathematics 2024-07-24 Lea Bold , Lars Grüne , Manuel Schaller , Karl Worthmann

Accurate prediction of application performance is critical for enabling effective scheduling and resource management in resource-constrained dynamic edge environments. However, achieving predictable performance in such environments remains…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-10-24 Panagiotis Giannakopoulos , Bart van Knippenberg , Kishor Chandra Joshi , Nicola Calabretta , George Exarchakos

Physical systems whose dynamics are governed by partial differential equations (PDEs) find applications in numerous fields, from engineering design to weather forecasting. The process of obtaining the solution from such PDEs may be…

Machine Learning · Computer Science 2022-09-21 Pratyush Bhatt , Yash Kumar , Azzeddine Soulaimani

We propose an analytical construction of observable functions in the extended dynamic mode decomposition (EDMD) algorithm. EDMD is a numerical method for approximating the spectral properties of the Koopman operator. The choice of…

Systems and Control · Electrical Eng. & Systems 2021-01-06 Marcos Netto , Yoshihiko Susuki , Venkat Krishnan , Yingchen Zhang

In this paper we present a mathematical model of the Empirical Mode Decomposition (EMD). Although EMD is a powerful tool for signal processing, the algorithm itself lacks an appropriate theoretical basis. The interpolation and iteration…

Signal Processing · Electrical Eng. & Systems 2018-02-06 Heming Wang , Richard Mann , Edward R. Vrscay

Conventional large language models (LLMs) are equipped with dozens of GB to TB of model parameters, making inference highly energy-intensive and costly as all the weights need to be loaded to onboard processing elements during computation.…

Hardware Architecture · Computer Science 2025-07-28 Wei-Hsing Huang , Janak Sharda , Cheng-Jhih Shih , Yuyao Kong , Faaiq Waqar , Pin-Jun Chen , Yingyan , Lin , Shimeng Yu
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