Related papers: Base pair fluctuations in helical models for nucle…
Rotation-vibration spectra of the nitric acid molecule, HNO\3, are calculated for wavenumbers up to 7000~\cm. Calculations are performed using a Hamiltonian expressed in internal curvilinear vibrational coordinates solved using a hybrid…
The instantaneous normal modes corresponding to base pair vibrations (radial modes) and twist angle fluctuations (angular modes) of a DNA molecule model at ambient temperature are theoretically investigated. Due to thermal disorder, normal…
MnP is a metal that shows successive magnetic transitions from paramagnetic to ferromagnetic and helical magnetic phases at ambient pressure with decreasing temperature. With applied pressure, the magnetic transition temperatures decrease…
The role of thermal pressure fluctuation excited within tightly packaged DNA prior to ejection from protein capsid shells is discussed in a model calculation. At equilibrium before ejection we assume the DNA is folded many times into a…
Plectonemes are intertwined helically looped domains which form when a DNA molecule is supercoiled, i.e. over- or under-wounded. They are ubiquitous in cellular DNA and their physical properties have attracted significant interest both from…
Many physical systems can be mapped onto solved or "solvable" models of magnetism. In this work, we have mapped the statistical mechanics of columnar phases of ideally helical rigid DNA -- subject to the earlier found unusual, frustrated…
Stiff, elongated biomolecules such as filamentous viruses, DNA or cellulose nanocrystals are known to form liquid crystals often exhibiting a helical supramolecular organization. Little is known about the microscopic origin, size and…
Spin fluctuations are a leading candidate for the pairing mechanism in high temperature superconductors, supported by the common appearance of a distinct resonance in the spin susceptibility across the cuprates, iron-based superconductors…
The effect of fluctuations on the nuclear magnetic resonance (NMR) relaxation rate, $W$, is studied in a complete phase diagram of a 2D superconductor above the upper critical field line $H_{c2}(T)$ . In the region of relatively high…
A system that possesses translational symmetry but breaks orientational symmetry is known as a nematic phase. While there are many examples of nematic phases in a wide range of contexts, such as in liquid crystals, complex oxides, and…
Recently, many interesting features of the hydrodynamically coupled motions of the Brownian particles in a viscous fluid have been reported which are impossible for the uncoupled motions of the similar particles. However, it is expected…
Recent (Bose \& Durbin, \textit{Phys. Rev. Fluids}, 1, 073602, 2016) direct numerical simulations (DNS) of adverse- and zero-pressure-gradient boundary layers beneath moderate levels of free stream turbulence ($Tu$ $\le 2\%$) revealed a…
Spin fluctuation-induced superconductivity in quasi-two dimensional organic compounds, \kappa-BEDT-TTF salts, is investigated within a fluctuation exchange (FLEX) approximation using a half-filled Hubbard model with a right-angled isosceles…
Particle number fluctuations and correlations in nucleus-nucleus collisions at SPS and RHIC energies are studied within microscopic transport approaches. In this review we focus on the Hadron-String-Dynamics (HSD) and…
Starting from the recognition that hadrons are not produced smoothly at phase transition, the fluctuation of spatial patterns is investigated by finding a measure of the voids that exhibits scaling behavior. The Ising model is used to…
We have developed a new in situ method to calibrate optical tweezers experiments and simultaneously measure the size of the trapped particle or the viscosity of the surrounding fluid. The positional fluctuations of the trapped particle are…
Recently, a theoretical framework known as {\it ballistic macroscopic fluctuation theory} has been developed to study large-scale fluctuations and correlations in many-body systems exhibiting ballistic transport. In this paper, we review…
Multistep denaturation in a short circular DNA molecule is analyzed by a mesoscopic Hamiltonian model which accounts for the helicoidal geometry. Computation of melting profiles by the path integral method suggests that stacking…
We present a self-contained theory for the mechanical response of DNA in single molecule experiments. Our model is based on a 1D continuum description of the DNA molecule and accounts both for its elasticity and for DNA-DNA electrostatic…
We develop a new theory of pairing and magnetic spin fluctuation effect near the quantum critical point. Several novel properties are predicted: 1) based on a spin fermion model, we derive two new interactions, a) a spin deformational…