Related papers: Base pair fluctuations in helical models for nucle…
Motivated by recent advances in the creation of few-body atomic Fermi gases with attractive interactions, we study theoretically the few-to-many-particle crossover of pair excitations, which for large particle numbers evolve into a mode…
We call \textit{monomer} a B-DNA base pair and study, analytically and numerically, electron or hole oscillations in \textit{monomers}, \textit{dimers} and \textit{trimers}. We employ two Tight Binding (TB) approaches: (I) at the base-pair…
The fluctuations are termed mesoscopic, when their typical size is essentially larger then the average distance between the nearest neighbors, while being much smaller than the overall system size. Since the features of mesoscopic…
The statistical physics of homogeneous DNA is investigated by the imaginary time path integral formalism. The base pair stretchings are described by an ensemble of paths selected through a macroscopic constraint, the fulfillement of the…
The macroscopic curvature induced in the double helical B-DNA by regularly repeated adenine tracts (A-tracts) is a long known, but still unexplained phenomenon. This effect plays a key role in DNA studies because it is unique in the amount…
Fluctuations are important near phase transitions, where they can be difficult to describe quantitatively. Superconductivity in mesoscopic rings is particularly intriguing because the critical temperature is an oscillatory function of…
By exerting mechanical force it is possible to unfold/refold RNA molecules one at a time. In a small range of forces, an RNA molecule can hop between the folded and the unfolded state with force-dependent kinetic rates. Here, we introduce a…
To gain a deeper insight into cellular processes such as transcription and translation, one needs to uncover the mechanisms controlling the configurational changes of nucleic acids. As a step toward this aim, we present here a novel…
Two dimensional crystals melt via an intermediate \textit{hexatic} phase which is characterized by an anomalous scaling of spatial and orientational correlation functions and the absence of an attraction between dislocations. We propose a…
We report model calculations on DNA single strands which describe the equilibrium dynamics and kinetics of hairpin formation and melting. Modeling is at the level of single bases. Strand rigidity is described in terms of simple polymer…
A nonperturbative correction to the thermal nucleation rate of critical bubbles in a first order phase transition is estimated. The correction originates from large-amplitude fluctuations which may be present before the transition occurs.…
The Maxwellian Average Cross Section (MACS) is usually calculated with help of the statistical codes that do not take into account fluctuations of individual resonance parameters. The actual MACS can substantially deviate from its…
We discuss fluctuations near the second order phase transition where the free energy has an additional non-Hermitian term. The spectrum of the fluctuations changes when the odd-parity potential amplitude exceeds the critical value…
We study the limit fluctuations of the rescaled occupation time process of a branching particle system in $\mathbb{R}^d$, where the particles are subject to symmetric $\alpha$-stable migration ($0<\alpha\leq2$), critical binary branching,…
Squeezed correlations of particle-antiparticle pairs, also called Back-to-Back Correlations, are predicted to appear if the hadron masses are modified in the hot and dense hadronic medium formed in high energy nucleus-nucleus collisions.…
We have studied the fluctuation (noise) in the position of sliding blocks under constant driving forces on different substrate surfaces. The experimental data are complemented by simulations using a simple spring-block model where the…
Binary neutron stars in circular orbits can be modeled as helically symmetric, i.e., stationary in a rotating frame. This symmetry gives rise to a first integral of the Euler equation, often employed for constructing equilibrium solutions…
In this work we propose a model for DNA double helix within the tight-binding framework that incorporates the helicity of the molecules. We have studied localization properties of three DNAsequences,the periodic poly(dG)-poly(dC) and…
By adopting a $T$-matrix based method within $G_0G$ approximation for the pair susceptibility, we studied the effects of pairing fluctuation on the BCS-BEC crossover in symmetric nuclear matter. The pairing fluctuation induces a pseudogap…
The simplest model of DNA mechanics describes the double helix as a continuous rod with twist and bend elasticity. Recent work has discussed the relevance of a little-studied coupling $G$ between twisting and bending, known to arise from…