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Spatio-temporal models for infection counts generally follow themes of the broader disease mapping literature, but may need to address specific features of spatio-temporal infection data including considerable time fluctuations (with…

Applications · Statistics 2022-02-22 P. Congdon

While COVID-19 is rapidly propagating around the globe, the need for providing real-time forecasts of the epidemics pushes fits of dynamical and statistical models to available data beyond their capabilities. Here we focus on statistical…

Populations and Evolution · Quantitative Biology 2020-06-08 Tommaso Alberti , Davide Faranda

The number of new infections per day is a key quantity for effective epidemic management. It can be estimated relatively directly by testing of random population samples. Without such direct epidemiological measurement, other approaches are…

Applications · Statistics 2021-06-18 Simon N. Wood

We investigate the problem of estimating the distribution of the individual reproduction number governing the COVID-19 pandemic. Under the assumption that this random variable follows a Negative Binomial distribution, we focus on…

Applications · Statistics 2021-01-21 Alexander Braumann , Jonas Krampe , Jens-Peter Kreiss , Efstathios Paparoditis

In this paper, we develop an extension of standard epidemiological models, suitable for COVID-19. This extension incorporates the transmission due to pre-symptomatic or asymptomatic carriers of the virus. Furthermore, this model also…

Populations and Evolution · Quantitative Biology 2020-11-20 Anirban Ghatak , Shivshanker Singh Patel , Soham Bonnerjee , Subhrajyoty Roy

We present two different approaches for modeling the spread of the COVID-19 pandemic. Both approaches are based on the population classes susceptible, exposed, infectious, quarantined, and recovered and allow for an arbitrary number of…

Populations and Evolution · Quantitative Biology 2021-05-11 Constantia Alexandrou , Vangelis Harmandaris , Anastasios Irakleous , Giannis Koutsou , Nikos Savva

Motivated by COVID-19, we develop and analyze a simple stochastic model for a disease spread in human population. We track how the number of infected and critically ill people develops over time in order to estimate the demand that is…

Populations and Evolution · Quantitative Biology 2022-05-10 Jakub Svoboda , Josef Tkadlec , Andreas Pavlogiannis , Krishnendu Chatterjee , Martin A. Nowak

Since the first outbreak of the COVID-19 epidemic at the end of 2019, data has been made available on the number of infections, deaths and recoveries for all countries of the World, and that data can be used for statistical analysis. The…

Populations and Evolution · Quantitative Biology 2020-04-01 Dávid Tátrai , Zoltán Várallyay

Millions of people have been infected and lakhs of people have lost their lives due to the worldwide ongoing novel Coronavirus (COVID-19) pandemic. It is of utmost importance to identify the future infected cases and the virus spread rate…

Physics and Society · Physics 2021-05-04 Naresh Kumar , Seba Susan

We provide a predictive analysis of the spread of COVID-19, also known as SARS-CoV-2, using the dataset made publicly available online by the Johns Hopkins University. Our main objective is to provide predictions of the number of infected…

Machine Learning · Computer Science 2020-05-26 Alireza M. Javid , Xinyue Liang , Arun Venkitaraman , Saikat Chatterjee

Human society under the COVID-19 pandemic can be viewed as a complex system, the evolution of which is characterized by such the parameters as the number of newly diseased, the number of seriously ill patients, the number of those who were…

Physics and Society · Physics 2024-01-03 Anatolii V. Mokshin , Yana A. Shadrina , Vladimir G. Sherputovskiy

Classical compartmental models in epidemiology often assume a homogeneous population for simplicity, which neglects the inherent heterogeneity among individuals. This assumption frequently leads to inaccurate predictions when applied to…

Populations and Evolution · Quantitative Biology 2024-09-09 Ning Jiang , Weiqi Chu , Yao Li

We propose a deterministic SAIVRD model and a stochastic SARV model of the epidemic COVID-19 involving asymptomatic infections and vaccinations to conduct data forecasts using time-dependent parameters. The forecast by our deterministic…

Populations and Evolution · Quantitative Biology 2022-09-28 Bo-Sheng Chen , Zong-Ying Wu , Yen-Jia Chen , Jann-Long Chern

Compartmental models are used in epidemiology to capture the evolution of infectious diseases such as COVID-19 in a population by assigning members of it to compartments with labels such as susceptible, infected, and recovered. In a…

Formal Languages and Automata Theory · Computer Science 2024-02-15 Tim Leys , Guillermo A. Perez

The long duration of the COVID-19 pandemic allowed for multiple bursts in the infection and death rates, the so-called epidemic waves. This complex behavior is no longer tractable by simple compartmental model and requires more…

We present a robust data-driven machine learning analysis of the COVID-19 pandemic from its early infection dynamics, specifically infection counts over time. The goal is to extract actionable public health insights. These insights include…

Populations and Evolution · Quantitative Biology 2020-04-06 Malik Magdon-Ismail

The COVID-19 pandemic highlighted the need to improve the modeling, estimation, and prediction of how infectious diseases spread. SEIR-like models have been particularly successful in providing accurate short-term predictions. This study…

Populations and Evolution · Quantitative Biology 2024-12-31 Jorge P. Zubelli , Jennifer Loria , Vinicius V. L. Albani

Following the emergence of a novel coronavirus (SARS-CoV-2) and its spread outside of China, Europe has experienced large epidemics. In response, many European countries have implemented unprecedented non-pharmaceutical interventions…

In this work, using a detailed dataset furnished by National Health Authorities concerning the Province of Pavia (Lombardy, Italy), we propose to determine the essential features of the ongoing COVID-19 pandemic in term of contact dynamics.…

Populations and Evolution · Quantitative Biology 2021-07-05 M. Zanella , C. Bardelli , G. Dimarco , S. Deandrea , P. Perotti , M. Azzi , S. Figini , G. Toscani

Policy-makers require data-driven tools to assess the spread of COVID-19 and inform the public of their risk of infection on an ongoing basis. We propose a rigorous hybrid model-and-data-driven approach to risk scoring based on a…