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In the growth of bacterial colonies, a great variety of complex patterns are observed in experiments, depending on external conditions and the bacterial species. Typically, existing models employ systems of reaction-diffusion equations or…

Biological Physics · Physics 2019-11-12 Lautaro Vassallo , David Hansmann , Lidia A. Braunstein

A contemporary procedure to grow artificial tissue is to seed cells onto a porous biomaterial scaffold and culture it within a perfusion bioreactor to facilitate the transport of nutrients to growing cells. Typical models of cell growth for…

Tissues and Organs · Quantitative Biology 2018-05-01 Andrew L. Krause , Dmitry Beliaev , Robert A. Van Gorder , Sarah L. Waters

A cross-diffusion system modeling the information herding of individuals is analyzed in a bounded domain with no-flux boundary conditions. The variables are the species' density and an influence function which modifies the information state…

Analysis of PDEs · Mathematics 2018-12-24 Ansgar Jüngel , Christian Kuehn , Lara Trussardi

In [5] the structure of the bifurcation diagrams of a class of superlinear indefinite problems with a symmetric weight was ascertained, showing that they consist of a primary branch and secondary loops bifurcating from it. In [4] it has…

Classical Analysis and ODEs · Mathematics 2015-12-08 Andrea Tellini

We investigate the performance of First-In, First-Out (FIFO) queues over wireless networks. We characterize the stability region of a general scenario where an arbitrary number of FIFO queues, which are served by a wireless medium, are…

Networking and Internet Architecture · Computer Science 2016-01-29 Shanyu Zhou , Hulya Seferoglu , Erdem Koyuncu

We present a detailed study of a scalar differential equation with threshold state-dependent delayed feedback. This equation arises as a simplification of a gene regulatory model. There are two monotone nonlinearities in the model: one…

Dynamical Systems · Mathematics 2025-04-29 Tomas Gedeon , Antony R. Humphries , Michael C. Mackey , Hans-Otto Walther , Zhao Wang

The dynamics of globally coupled map lattices can be described in terms of a nonlinear Frobenius--Perron equation in the limit of large system size. This approach allows for an analytical computation of stationary states and their…

chao-dyn · Physics 2016-08-14 Wolfram Just

This paper deals with the balanced truncation model reduction of discrete-time, linear time-varying, heterogeneous subsystems interconnected over finite arbitrary directed graphs. The information transfer between the subsystems is subject…

Optimization and Control · Mathematics 2017-08-15 Dany Abou Jaoude , Mazen Farhood

A network with local dynamics of logistic type is considered. We implement a mean-field multiplicative coupling among first-neighbor nodes. When the coupling parameter is small the dynamics is dissipated and there is no activity: the…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 R. Lopez-Ruiz , Y. Moreno , S. Boccaletti , D. -U. Hwang , A. F. Pacheco

Transient amplification has been proposed as an important mechanism not only in neuroscience but in many areas modeled by dynamical systems. Despite that, there is no clear biologically plausible mechanism which fine-tunes the coupling…

Disordered Systems and Neural Networks · Physics 2020-11-18 Wojciech Tarnowski

This paper presents a framework to perform bifurcation analysis in laboratory experiments or simulations. We employ control-based continuation to study the dynamics of a macroscopic variable of a microscopically defined model, exploring the…

Dynamical Systems · Mathematics 2022-08-02 Ilias Panagiotopoulos , Jens Starke , Jan Sieber , Wolfram Just

Exactly solvable neural network models with asymmetric weights are rare, and exact solutions are available only in some mean-field approaches. In this article we find exact analytical solutions of an asymmetric spin-glass-like model of…

Neurons and Cognition · Quantitative Biology 2017-02-16 Diego Fasoli , Anna Cattani , Stefano Panzeri

We study molecular dynamics within populations of diffusively coupled cells under the assumption of fast diffusive exchange. As a technical tool, we propose conditions on boundedness and ultimate boundedness for systems with a singular…

Cell Behavior · Quantitative Biology 2012-12-19 Steffen Waldherr , Frank Allgöwer

The stability of functional differential equations under delayed feedback is investigated near a Hopf bifurcation. Necessary and sufficient conditions are derived for the stability of the equilibrium solution using averaging theory. The…

Classical Analysis and ODEs · Mathematics 2008-12-31 Fatihcan M. Atay

A general theory is developed for the evolution of the cell order (CO) distribution in planar granular systems. Dynamic equations are constructed and solved in closed form for several examples: systems under compression; dilation of very…

Soft Condensed Matter · Physics 2019-09-27 Clara C. Wanjura , Paula Gago , Takashi Matsushima , Raphael Blumenfeld

Recently there has been an increasing interest in studying dynamical processes on networks exhibiting higher-order structures, such as simplicial complexes, where the dynamics acts above and beyond dyadic interactions. Using simulations or…

Physics and Society · Physics 2023-09-25 István Z. Kiss , Iacopo Iacopini , Péter L. Simon , Nicos Georgiou

In complex systems, information propagation can be defined as diffused or delocalized, weakly localized, and strongly localized. This study investigates the application of graph neural network models to learn the behavior of a linear…

Machine Learning · Computer Science 2025-09-09 Priodyuti Pradhan , Amit Reza

Bifurcation theory is a powerful tool for studying how the dynamics of a neural network model depends on its underlying neurophysiological parameters. However, bifurcation theory has been developed mostly for smooth dynamical systems and…

Neurons and Cognition · Quantitative Biology 2019-01-16 Diego Fasoli , Stefano Panzeri

In this paper, feedforward neural networks are presented that have nonlinear weight functions based on look--up tables, that are specially smoothed in a regularization called the diffusion. The idea of such a type of networks is based on…

Neural and Evolutionary Computing · Computer Science 2007-05-23 Artur Rataj

Single trial analyses of ensemble activity in alert animals demonstrate that cortical circuits dynamics evolve through temporal sequences of metastable states. Metastability has been studied for its potential role in sensory coding, memory…

Neurons and Cognition · Quantitative Biology 2016-03-23 Luca Mazzucato , Alfredo Fontanini , Giancarlo La Camera
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