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The extraction of molecular structures and reaction data from scientific documents is challenging due to their varied, unstructured chemical formats and complex document layouts. To address this, we introduce MolMole, a vision-based deep…

Systematic exploration of hypotheses is a major part of any empirical research. In software engineering, we often produce unique tools for experiments and evaluate them independently on different data sets. In this paper, we present…

Software Engineering · Computer Science 2021-10-13 Christian Kröher , Sascha El-Sharkawy , Klaus Schmid

As enterprise data grows in size and complexity, column-level data lineage, which records the creation, transformation, and reference of each column in the warehouse, has been the key to effective data governance that assists tasks like…

Databases · Computer Science 2025-05-30 Shi Heng Zhang , Zhengjie Miao , Jiannan Wang

This paper introduces a new quantization scheme for real and complex Grassmannian sources. The proposed approach relies on a structured codebook based on a geometric construction of a collection of bent grids defined from an initial mesh on…

Information Theory · Computer Science 2016-10-27 Alexis Decurninge , Maxime Guillaud

Atomic neural networks (ANNs) constitute a class of machine learning methods for predicting potential energy surfaces and physico-chemical properties of molecules and materials. Despite many successes, developing interpretable ANN…

Computational Physics · Physics 2020-01-17 Yunqi Shao , Matti Hellström , Pavlin D. Mitev , Lisanne Knijff , Chao Zhang

Model networks and their underlying topologies have been used as a reference for techno-economic studies for several decades. Existing reference topologies for optical networks may cover different network segments such as backbone, metro…

Tool use has turned large language models (LLMs) into powerful agents that can perform complex multi-step tasks by dynamically utilising external software components. However, these tools must be implemented in advance by human developers,…

Computation and Language · Computer Science 2025-06-02 Georg Wölflein , Dyke Ferber , Daniel Truhn , Ognjen Arandjelović , Jakob Nikolas Kather

Machine learning models are advancing circuit design, particularly in analog circuits. They typically generate netlists that lack human interpretability. This is a problem as human designers heavily rely on the interpretability of circuit…

The best molecular line lists for astrophysical applications today require both high accuracy of line positions for strong lines as well as high overall completeness. The former is required to enable, for example, molecular detection in…

RNA sequencing techniques, like bulk RNA-seq and Single Cell (sc) RNA-seq, are critical tools for the biologist looking to analyze the genetic activity/transcriptome of a tissue or cell during an experimental procedure. Platforms like…

Genomics · Quantitative Biology 2024-07-08 Devam Mondal , Atharva Inamdar

A new class of linear sequence generators based on cellular automata is here introduced in order to model several nonlinear keystream generators with practical applications in symmetric cryptography. The output sequences are written as…

Cryptography and Security · Computer Science 2010-06-08 P. Caballero-Gil , A. Fúster-Sabater , M. E. Pazo-Robles

Enabling Large Language Models (LLMs) to generate citations in Question-Answering (QA) tasks is an emerging paradigm aimed at enhancing the verifiability of their responses when LLMs are utilizing external references to generate an answer.…

Computation and Language · Computer Science 2024-12-18 Jiajun Shen , Tong Zhou , Yubo Chen , Kang Liu

Data lineage describes the relationship between individual input and output data items of a workflow, and has served as an integral ingredient for both traditional (e.g., debugging, auditing, data integration, and security) and emergent…

Databases · Computer Science 2018-01-23 Fotis Psallidas , Eugene Wu

LevelScheme is a scientific figure preparation system for Mathematica. The main emphasis is upon the construction of level schemes, or level energy diagrams, as used in nuclear, atomic, molecular, and hadronic physics. LevelScheme also…

Computational Physics · Physics 2007-05-23 M. A. Caprio

A generate and test algorithm is described which parses a surface form into one or more lexical entries using linearly ordered phonological rules. This algorithm avoids the exponential expansion of search space which a naive parsing…

cmp-lg · Computer Science 2008-02-03 Michael Maxwell

Benchmark data sets are a cornerstone of machine learning development and applications, ensuring new methods are robust, reliable and competitive. The relative rarity of benchmark sets in computational science, due to the uniqueness of the…

Machine Learning · Computer Science 2025-07-01 Amanda S Barnard

This letter shows that linear Cellular Automata based on rules 90/150 generate all the solutions of linear difference equations with binary constant coefficients. Some of these solutions are pseudo-random noise sequences with application in…

Cryptography and Security · Computer Science 2015-03-17 A. Fúster-Sabater , P. Caballero-Gil

A software for simplification of Dirac matrix polynomials that arise in particle physics problems is implemented.

High Energy Physics - Theory · Physics 2023-09-26 Sergii Kutnii

Generative models are becoming a tool of choice for exploring the molecular space. These models learn on a large training dataset and produce novel molecular structures with similar properties. Generated structures can be utilized for…

Deep generative models for graph-structured data offer a new angle on the problem of chemical synthesis: by optimizing differentiable models that directly generate molecular graphs, it is possible to side-step expensive search procedures in…

Machine Learning · Statistics 2022-09-28 Nicola De Cao , Thomas Kipf