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We introduce, analyze, and implement a new method for parameter identification for system of ordinary differential equations that are used to model sets of biochemical reactions. Our method relies on the integral formulation of the ODE…

Quantitative Methods · Quantitative Biology 2007-05-23 S. A. Belbas , Suhnghee Kim

Lie group methods are applied to the time-dependent, monoenergetic neutron diffusion equation in materials with spatial and time dependence. To accomplish this objective, the underlying 2nd order partial differential equation (PDE) is…

Analysis of PDEs · Mathematics 2019-03-21 Jesse F. Giron , Scott D. Ramsey , Brian A. Temple

We present a simple, unified approach to determining the growth law for the characteristic length scale, $L(t)$, in the phase ordering kinetics of a system quenched from a disordered phase to within an ordered phase. This approach, based on…

Condensed Matter · Physics 2009-10-22 A. D. Rutenberg , A. J. Bray

We study phase transitions and the nature of order in a class of classical generalized $O(N)$ nonlinear $\sigma$-models (NLS) constructed by minimally coupling pure NLS with additional degrees of freedom in the form of (i) Ising…

Statistical Mechanics · Physics 2015-12-23 Tirthankar Banerjee , Niladri Sarkar , Abhik Basu

Systems whose time evolutions are entirely deterministic can nevertheless be studied probabilistically, i.e. in terms of the evolution of probability distributions rather than individual trajectories. This approach is central to the…

Dynamical Systems · Mathematics 2019-09-06 S. Richard Taylor

Neural Ordinary Differential Equations (ODEs) represent a significant advancement at the intersection of machine learning and dynamical systems, offering a continuous-time analog to discrete neural networks. Despite their promise, deploying…

Numerical Analysis · Mathematics 2025-06-18 Matteo Caldana , Jan S. Hesthaven

We consider functional differential equations(FDEs) which are perturbations of smooth ordinary differential equations(ODEs). The FDE can involve multiple state-dependent delays or distributed delays (forward or backward). We show that,…

Dynamical Systems · Mathematics 2021-03-10 Jiaqi Yang , Joan Gimeno , Rafael de la Llave

Very accurate wave functions are calculated for small transition metal oxide molecules. These wave functions are decomposed using reduced density matrices to study the underlying correlation of electrons. The correlation is primarily of…

Strongly Correlated Electrons · Physics 2015-06-11 Lucas K. Wagner

One of the simplest examples of a robust heteroclinic cycle involves three saddle equilibria: each one is unstable to the next in turn, and connections from one to the next occur within invariant subspaces. Such a situation can be described…

Pattern Formation and Solitons · Physics 2019-04-19 Claire M Postlethwaite , Alastair M Rucklidge

Biochemical molecules interact through modification and binding reactions, giving raise to a combinatorial number of possible biochemical species. The time-dependent evolution of concentrations of the species is commonly described by a…

Molecular Networks · Quantitative Biology 2019-03-22 Andreea Beica , Jérôme Feret , Tatjana Petrov

Fluid turbulence is characterized by strong coupling across a broad range of scales. Furthermore, besides the usual local cascades, such coupling may extend to interactions that are non-local in scale-space. As such the computational…

Discrete differential equations appear most prominently in planar map and lattice path enumeration. In this work we consider discrete differential equations with an additional parameter $x$, where the order of the equation is $1$ for $x=0$…

Combinatorics · Mathematics 2026-03-23 Michael Drmota , Eva-Maria Hainzl

We study soliton solutions to a nonlinear Schrodinger equation with a saturated nonlinearity. Such nonlinearities are known to possess minimal mass soliton solutions. We consider a small perturbation of a minimal mass soliton, and identify…

Pattern Formation and Solitons · Physics 2015-05-13 J. Marzuola , S. Raynor , G. Simpson

The venerable 2D point-vortex model plays an important role as a simplified version of many disparate physical systems, including superfluids, Bose-Einstein condensates, certain plasma configurations, and inviscid turbulence. This system is…

Chaotic Dynamics · Physics 2013-05-29 Spencer A. Smith , Bruce M. Boghosian

In this paper, we derive general theorems for controlling (vector-valued) first order ordinary differential equations such that its solutions stop at a finite time $T>0$ and apply them to relaxation and dissipative oscillation processes. We…

Analysis of PDEs · Mathematics 2019-03-18 Richard Kowar

A consistent perturbation theory expansion is presented for phase-ordering kinetics in the case of a nonconserved scalar order parameter. At zeroth order in this expansion one obtains the theory due to Ohta, Jasnow and Kawasaki (OJK). At…

Statistical Mechanics · Physics 2009-10-31 Gene F. Mazenko

The out-of-time-ordered correlation (OTOC) function is an important new probe in quantum field theory which is treated as a significant measure of random quantum correlations. In this paper, with the slogan "Cosmology meets Condensed Matter…

High Energy Physics - Theory · Physics 2020-09-17 Sayantan Choudhury

We present a multirate method that is particularly suited for integrating the systems of Ordinary Differential Equations (ODEs) that arise in step models of surface evolution. The surface of a crystal lattice, that is slightly miscut from a…

Numerical Analysis · Mathematics 2008-10-15 Pak-Wing Fok , Rodolfo R. Rosales

Using numerical simulations of a model disk system, we demonstrate that a machine learning generated order parameter can detect depinning transitions and different dynamic flow phases in systems driven far from equilibrium. We specifically…

Statistical Mechanics · Physics 2024-04-23 D. McDermott , C. J. O. Reichhardt , C. Reichhardt

Phase transitions correspond to the singular behavior of physical systems in response to continuous control parameters like temperature or external fields. Near continuous phase transitions, associated with the divergence of a correlation…