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We analyze oscillatory instabilities for a coupled PDE-ODE system modeling the communication between localized spatially segregated dynamically active signaling compartments that are coupled through a passive extracellular bulk diffusion…

Pattern Formation and Solitons · Physics 2020-06-09 Sarafa A. Iyaniwura , Michael J. Ward

Soft materials (e.g., enveloped viruses, liposomes, membranes and supercooled liquids) simultaneously deform or display collective behaviors, while undergoing atomic scale vibrations and collisions. While the multiple space-time character…

Soft Condensed Matter · Physics 2014-01-03 Peter Ortoleva , Abhishek Singharoy , Stephen Pankavich

Biological systems are often modeled as a system of ordinary differential equations (ODEs) with time-invariant parameters. However, cell signaling events or pharmacological interventions may alter the cellular state and induce multi-mode…

Quantitative Methods · Quantitative Biology 2020-04-28 Bing Liu

Spontaneous symmetry breaking occurs in various equilibrium and nonequilibrium systems, where phase transitions are typically marked by a single critical point that separates ordered and disordered regimes. We reveal a novel phenomenon in…

Single molecule time trajectories of biomolecules provide glimpses into complex folding landscapes that are difficult to visualize using conventional ensemble measurements. Recent experiments and theoretical analyses have highlighted…

Quantitative Methods · Quantitative Biology 2017-02-08 Wonseok Hwang , Il-Buem Lee , Seok-Cheol Hong , Changbong Hyeon

We adapt the one parameter scaling theory (OPT) to the context of quantum chaos. As a result we propose a more precise characterization of the universality classes associated to Wigner-Dyson and Poisson statistics which takes into account…

Disordered Systems and Neural Networks · Physics 2009-11-13 Antonio M. Garcia-Garcia , Jiao Wang

Pattern formation is a widely observed phenomenon in diverse fields including materials physics, developmental biology and ecology, among many others. The physics underlying the patterns is specific to the mechanisms, and is encoded by…

Computational Engineering, Finance, and Science · Computer Science 2024-03-28 Z. Wang , X. Huan , K. Garikipati

We study the role of the control parameter triggering nematic order (temperature or concentration) on the dynamical behavior of a system of nanorods under shear. Our study is based on a set of mesoscopic equations of motion for the…

Soft Condensed Matter · Physics 2013-06-27 David A. Strehober , Harald Engel , Sabine H. L. Klapp

Identification of parameters in ordinary differential equations (ODEs) is an important and challenging task when modeling dynamic systems in biomedical research and other scientific areas, especially with the presence of time-varying…

Methodology · Statistics 2022-03-02 Yan Sun , Shihao Yang

End-to-end learning of dynamical systems with black-box models, such as neural ordinary differential equations (ODEs), provides a flexible framework for learning dynamics from data without prescribing a mathematical model for the dynamics.…

Machine Learning · Statistics 2022-06-20 Paidamoyo Chapfuwa , Sherri Rose , Lawrence Carin , Edward Meeds , Ricardo Henao

Interacting particle systems with many degrees of freedom may undergo phase transitions to sustain atypical fluctuations of dynamical observables such as the current or the activity. This leads in some cases to symmetry-broken space-time…

Statistical Mechanics · Physics 2019-08-23 Carlos Pérez-Espigares , Pablo I. Hurtado

Using ultrashort laser pulses, it has become possible to probe the dynamics of long-range order in solids on microscopic timescales. In the conventional description of symmetry-broken phases within time-dependent Ginzburg-Landau theory, the…

Strongly Correlated Electrons · Physics 2023-06-08 Antonio Picano , Francesco Grandi , Martin Eckstein

Traveling wavetrains in generalized two-species predator-prey models and two-component reaction-diffusion equations are considered. The stability of the fixed points of the traveling wave ODEs (in the usual "spatial" variable) is…

Dynamical Systems · Mathematics 2015-10-01 Stefan C. Mancas , Roy S. Choudhury

Real-time dynamics of quantum observables provide direct access to excitation spectra and correlation functions in quantum many-body systems, but currently available quantum devices are limited to short evolution times due to decoherence.…

Quantum Physics · Physics 2026-03-17 Jinyang Li , Satoshi Iso , Shunji Matsuura , Lingxiao Wang , Xiaoyang Wang

In modelling of chemical, physical or biological systems it may occur that the coefficients, multiplying various terms in the equation of interest, differ greatly in magnitude, if a particular system of units is used. Such is, for instance,…

Computational Engineering, Finance, and Science · Computer Science 2020-05-26 Simone Rusconi , Denys Dutykh , Arghir Zarnescu , Dmitri Sokolovski , Elena Akhmatskaya

In this paper we provide conditions to ensure the existence, for $e>0$ sufficiently small, of periodic solutions of given period $T>0$ in a prescribed domain $U$ for a class of singularly perturbed first order differential systems. Here…

Classical Analysis and ODEs · Mathematics 2007-10-02 Mikhail Kamenskii , Oleg Makarenkov , Paolo Nistri

We address the out-of-equilibrium dynamics of many-body systems subject to slow time-dependent round-trip protocols across quantum and classical (thermal) phase transitions. We consider protocols where one relevant parameter w is slowly…

Statistical Mechanics · Physics 2022-06-29 Francesco Tarantelli , Ettore Vicari

This article introduces, and reviews recent work using, a simple optimisation technique for analysing the nonlinear stability of a state in a dynamical system. The technique can be used to identify the most efficient way to disturb a system…

Fluid Dynamics · Physics 2014-08-18 R. R. Kerswell , C. C. T. Pringle , A. P. Willis

The paper develops the stiffness relationship between the movements and forces among a system of discrete interacting grains. The approach is similar to that used in structural analysis, but the stiffness matrix of granular material is…

Soft Condensed Matter · Physics 2019-05-01 Matthew R. Kuhn , Florent Prunier , Ali Daouadji

One dimensional systems are under intense investigation, both from theoretical and experimental points of view, since they have rather peculiar characteristics which are of both conceptual and technological interest. We analyze the…

Statistical Mechanics · Physics 2013-05-29 Claudio Giberti , Lamberto Rondoni
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